removed dependency on `HTSeq`

jbloomlab / dms_tools2

software for the analysis and visualization of deep mutational scanning data

GNU General Public License v3.0

29 stars 20 forks source link

removed dependency on `HTSeq` #30

Closed jbloom closed 4 years ago

jbloom commented 4 years ago

Removing the HTSeq dependency is useful because HTSeq pins a specific older version of pysam. It turns out everything we were doing with HTSeq can be done directly with pysam.