Closed fwelsh closed 4 years ago
@fwelsh: Can you make and then push a few additional changes before I merge this:
Change function name to something syn_selection_by_codon
in the new syn_synonymous
module. The reason is that we are currently doing a different test for each module; in a future version we might test by amino acid (using 2 X N
table), and that would by syn_selection_by_aminoacid
.
Add spaces after the initial -
here, otherwise the docs won't render correctly as a space is required after list items.
Update the CHANGELOG.rst file to indicate that in the new version 2.6.2
you have added the syn_selection
module.
Update the version number here to 2.6.2
.
Added a new module which identifies sites with selection on synonymous codons, using Fisher's Exact test to calculate codon enrichment at each site.