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jbloomlab / dms_tools2

software for the analysis and visualization of deep mutational scanning data
GNU General Public License v3.0
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Added `--bcinfo_csv` argument to `dms2_bcsubamp` #42

Closed khdcrawford closed 4 years ago

khdcrawford commented 4 years ago

Added argument --bcinfo_csv to dms2_bcsubamp to allow the barcode info file to be output as a .csv rather than a .txt file.

Added a small test to the tests/test_bcsubamp.py.

Note: tests/test_batch_bcsubamp.py does not test the output of --bcinfo or --bcinfo_csv (and did not previously), so I was not easily able to test the effect of the --bcinfo_csv option on dms2_batch_bcsubamp, but the changes here are at least compatible with the previous tests.

khdcrawford commented 4 years ago

Ah yes, looks like I left several test logging lines in there. Will delete and push when I get back to my computer.