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jbloomlab / dms_tools2

software for the analysis and visualization of deep mutational scanning data
GNU General Public License v3.0
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fixed bug parsing version of fastq-dump >= 3.0.0 #66

Closed couteiral closed 1 year ago

couteiral commented 1 year ago

This PR fixes a compatibility bug with fastq-dump version 3.0.0 and higher. In the current version of fastq-dump, the output of fastq-dump -V is:

"fastq-dump" version 3.0.0

This PR introduces a few extra lines in fastqFromSRA to parse the version correctly.