fixed bug parsing version of fastq-dump >= 3.0.0

jbloomlab / dms_tools2

software for the analysis and visualization of deep mutational scanning data

GNU General Public License v3.0

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Closed couteiral closed 1 year ago

couteiral commented 2 years ago

This PR fixes a compatibility bug with fastq-dump version 3.0.0 and higher. In the current version of fastq-dump, the output of fastq-dump -V is:

"fastq-dump" version 3.0.0

This PR introduces a few extra lines in fastqFromSRA to parse the version correctly.

jbloom commented 1 year ago

This new version should now be on PyPI as 2.6.12.