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jbloomlab / dms_variants

Analyze deep mutational scanning of barcoded variants.
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extra_cols in #65

Closed ajgreaney closed 3 years ago

ajgreaney commented 3 years ago

@jbloom I am now using dms_variants version 0.8.8. I am trying to initialize the CodonVariantTable with dms_variants.codonvarianttable.CodonVariantTable.from_variant_count_df. I know the variantfile has the 'allowed_mutant' extra_cols that I'm trying to include (see top of first image below). But when I try to initialize the CodonVariantTable (bottom half of image below):

Screen Shot 2021-05-17 at 4 54 35 PM

I get the error shown here:

Screen Shot 2021-05-17 at 4 54 53 PM

jbloom commented 3 years ago

@ajgreaney, should be fixed in version 0.8.9.