update to use newer versions of dependencies - Githubissues

jbloomlab / dms_variants

Analyze deep mutational scanning of barcoded variants.

Other

6 stars 9 forks source link

update to use newer versions of dependencies #87

Closed jbloom closed 9 months ago

jbloom commented 9 months ago

1.5.0

Remove use of deprecated scipy functions like flip to use numpy alternatives instead (fixes this issue).
Re-format code with latest version of black.
Lint with ruff rather than flake8
Add pyarrow as dependency as required by pandas.
Tweaks to work with new versions of pandas and plotnine
Test with GitHub Actions rather than Travis CI