jbloomlab / seqneut-pipeline

Pipeline for analyzing sequencing-based neutralization assays
MIT License
0 stars 0 forks source link

parameters can now be constrained in range (`fixtop`, `fixbottom`, `fixslope`) #35

Closed jbloom closed 6 months ago

jbloom commented 6 months ago

In the curvefit_params, now fixslope should be specified in addition fixtop and fixbottom. In addition, all three of these can be set to constraint ranges rather than just totally free or to fixed values. Alongside this change, the slope of curve fits are now reported in key output files. Addresses this issue and this issue.

This is a backward-incompatible change in the configuration YAML, now you must specify fixslope under curvefit_params.