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jbrzusto / motusServer

R package to operate a server that processes data for https://motus.org
GNU General Public License v2.0
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problems with find_tags_motus and handlePlotData() revealed in job 213111 #165

Closed jbrzusto closed 7 years ago

jbrzusto commented 7 years ago 
Error in safeSys(bcmd, quote = FALSE): Error 2 from 'LD_LIBRARY_PATH=/usr/local/lib/boost_1.60
/sgm/bin/find_tags_motus --pulses_to_confirm=8 --frequency_slop=0.5 --min_dfreq=0 --max_dfreq=12
--pulse_slop=1.5 --burst_slop=4 --burst_slop_expansion=1 --use_events --max_skipped_bursts=20
--default_freq=166.376  --resume --bootnum=22 --src_sqlite /sgm/cache/motus_meta_db.sqlite
/sgm/recv//SG-1415BBBK0494.motus  2>&1  ':

   resumed successfully
   ...
   Warning: malformed line in input
     at line 406883:
   ...
   Reducing empty set

Pushed new batches from SG-1415BBBK0494 to motus.
Error: Error in sprintf("%d %s %s Tags (%s)", year, proj, site, condenseLabel):
 invalid format '%d'; use format %f, %e, %g or %a for numeric objects
jbrzusto commented 7 years ago

See similar errors for job 21470

   Job 214170 with 1 pending subjobs entered processing queue #4
   Running tag finder on receiver SG-4002BBBK1460 boot session 4
   Error in safeSys(bcmd, quote = FALSE): Error 2 from 'LD_LIBRARY_PATH=/usr/local/lib/boost_1.60 /sgm/bin/find_tags_motus --pulses_to_confirm=8 --frequency_slop=0.5 --min_dfreq=0 --max_dfreq=12 --pulse_slop=1.5 --burst_slop=4 --burst_slop_expansion=1 --use_events --max_skipped_bursts=20 --default_freq=166.376   --bootnum=4 --src_sqlite /sgm/cache/motus_meta_db.sqlite /sgm/recv//SG-4002BBBK1460.motus  2>&1  ':
   Warning: malformed line in input
     at line 41:
   
   Warning: malformed line in input
     at line 42:
   <80>?x$(6@<90><96>
   Warning: malformed line in input
     at line 155632:
   p2,1459
   Warning: malformed line in input
     at line 155633:
   898017.3861,-2.009,-60.91,-69.37
   Warning: malformed line in input
     at line 1537064:
   48
   Got gcd=0

   Running tag finder on receiver SG-4002BBBK1460 boot session 5
   Error in safeSys(bcmd, quote = FALSE): Error 2 from 'LD_LIBRARY_PATH=/usr/local/lib/boost_1.60 /sgm/bin/find_tags_motus --pulses_to_confirm=8 --frequency_slop=0.5 --min_dfreq=0 --max_dfreq=12 --pulse_slop=1.5 --burst_slop=4 --burst_slop_expansion=1 --use_events --max_skipped_bursts=20 --default_freq=166.376   --bootnum=5 --src_sqlite /sgm/cache/motus_meta_db.sqlite /sgm/recv//SG-4002BBBK1460.motus  2>&1  ':
   Warning: malformed line in input
     at line 592:

   Warning: malformed line in input
     at line 2530:
   p2,1459980609.7
   Warning: malformed line in input
     at line 2532:
   225,2.864,-59.6,-71.16
   Got gcd=0

   Running tag finder on receiver SG-4002BBBK1460 boot session 6
   Got 83 (unfiltered) detections.
   Running tag finder on receiver SG-4002BBBK1460 boot session 7
   Error in safeSys(bcmd, quote = FALSE): Error 2 from 'LD_LIBRARY_PATH=/usr/local/lib/boost_1.60 /sgm/bin/find_tags_motus --pulses_to_confirm=8 --frequency_slop=0.5 --min_dfreq=0 --max_dfreq=12 --pulse_slop=1.5 --burst_slop=4 --burst_slop_expansion=1 --use_events --max_skipped_bursts=20 --default_freq=166.376   --bootnum=7 --src_sqlite /sgm/cache/motus_meta_db.sqlite /sgm/recv//SG-4002BBBK1460.motus  2>&1  ':
   Warning: malformed line in input
     at line 517:

   Got gcd=0

   Running tag finder on receiver SG-4002BBBK1460 boot session 8
   Error in safeSys(bcmd, quote = FALSE): Error 2 from 'LD_LIBRARY_PATH=/usr/local/lib/boost_1.60 /sgm/bin/find_tags_motus --pulses_to_confirm=8 --frequency_slop=0.5 --min_dfreq=0 --max_dfreq=12 --pulse_slop=1.5 --burst_slop=4 --burst_slop_expansion=1 --use_events --max_skipped_bursts=20 --default_freq=166.376   --bootnum=8 --src_sqlite /sgm/cache/motus_meta_db.sqlite /sgm/recv//SG-4002BBBK1460.motus  2>&1  ':
   Warning: malformed line in input
     at line 1027:
   A<9c>
   Got gcd=0

   Running tag finder on receiver SG-4002BBBK1460 boot session 9
   Error in safeSys(bcmd, quote = FALSE): Error 2 from 'LD_LIBRARY_PATH=/usr/local/lib/boost_1.60 /sgm/bin/find_tags_motus --pulses_to_confirm=8 --frequency_slop=0.5 --min_dfreq=0 --max_dfreq=12 --pulse_slop=1.5 --burst_slop=4 --burst_slop_expansion=1 --use_events --max_skipped_bursts=20 --default_freq=166.376   --bootnum=9 --src_sqlite /sgm/cache/motus_meta_db.sqlite /sgm/recv//SG-4002BBBK1460.motus  2>&1  ':
   Warning: malformed line in input
     at line 23:

   Got gcd=0
jbrzusto commented 7 years ago

all apparently fixed as of 2017-05-15