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jbussemaker / SBArchOpt

Surrogate-Based Architecture Optimization toolbox
https://sbarchopt.readthedocs.io/
MIT License
14 stars 4 forks source link

Failed to build smt #3

Closed athulpg007 closed 1 year ago

athulpg007 commented 1 year ago

pip install sb-arch-opt[arch_sbo] failed with the following error. Perhaps this is due to something missing in my local env.

Requirement already satisfied: sb-arch-opt[arch_sbo] in ./venv/lib/python3.10/site-packages (1.1.4)
Requirement already satisfied: numpy in ./venv/lib/python3.10/site-packages (from sb-arch-opt[arch_sbo]) (1.25.0)
Requirement already satisfied: deprecated in ./venv/lib/python3.10/site-packages (from sb-arch-opt[arch_sbo]) (1.2.14)
Requirement already satisfied: scipy in ./venv/lib/python3.10/site-packages (from sb-arch-opt[arch_sbo]) (1.11.1)
Requirement already satisfied: pandas in ./venv/lib/python3.10/site-packages (from sb-arch-opt[arch_sbo]) (2.0.3)
Requirement already satisfied: ConfigSpace~=0.6.1 in ./venv/lib/python3.10/site-packages (from sb-arch-opt[arch_sbo]) (0.6.1)
Requirement already satisfied: more-itertools~=9.1 in ./venv/lib/python3.10/site-packages (from sb-arch-opt[arch_sbo]) (9.1.0)
Requirement already satisfied: cached-property~=1.5 in ./venv/lib/python3.10/site-packages (from sb-arch-opt[arch_sbo]) (1.5.2)
Requirement already satisfied: pymoo~=0.6.0.1 in ./venv/lib/python3.10/site-packages (from sb-arch-opt[arch_sbo]) (0.6.0.1)
Collecting smt~=2.0b5
  Using cached smt-2.0.tar.gz (272 kB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
Collecting numba
  Using cached numba-0.57.1-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (3.6 MB)
Collecting scikit-learn
  Using cached scikit_learn-1.3.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (10.8 MB)
Requirement already satisfied: typing-extensions in ./venv/lib/python3.10/site-packages (from ConfigSpace~=0.6.1->sb-arch-opt[arch_sbo]) (4.7.1)
Requirement already satisfied: pyparsing in ./venv/lib/python3.10/site-packages (from ConfigSpace~=0.6.1->sb-arch-opt[arch_sbo]) (3.1.0)
Requirement already satisfied: dill in ./venv/lib/python3.10/site-packages (from pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (0.3.6)
Requirement already satisfied: autograd>=1.4 in ./venv/lib/python3.10/site-packages (from pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (1.6.2)
Requirement already satisfied: cma==3.2.2 in ./venv/lib/python3.10/site-packages (from pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (3.2.2)
Requirement already satisfied: alive-progress in ./venv/lib/python3.10/site-packages (from pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (3.1.4)
Requirement already satisfied: matplotlib>=3 in ./venv/lib/python3.10/site-packages (from pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (3.7.1)
Collecting pyDOE2
  Using cached pyDOE2-1.3.0-py3-none-any.whl
Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.10/site-packages (from deprecated->sb-arch-opt[arch_sbo]) (1.15.0)
Collecting llvmlite<0.41,>=0.40.0dev0
  Using cached llvmlite-0.40.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (42.1 MB)
Collecting numpy
  Using cached numpy-1.24.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB)
Requirement already satisfied: pytz>=2020.1 in ./venv/lib/python3.10/site-packages (from pandas->sb-arch-opt[arch_sbo]) (2023.3)
Requirement already satisfied: tzdata>=2022.1 in ./venv/lib/python3.10/site-packages (from pandas->sb-arch-opt[arch_sbo]) (2023.3)
Requirement already satisfied: python-dateutil>=2.8.2 in ./venv/lib/python3.10/site-packages (from pandas->sb-arch-opt[arch_sbo]) (2.8.2)
Collecting threadpoolctl>=2.0.0
  Using cached threadpoolctl-3.1.0-py3-none-any.whl (14 kB)
Collecting joblib>=1.1.1
  Using cached joblib-1.3.1-py3-none-any.whl (301 kB)
Requirement already satisfied: future>=0.15.2 in ./venv/lib/python3.10/site-packages (from autograd>=1.4->pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (0.18.3)
Requirement already satisfied: pillow>=6.2.0 in ./venv/lib/python3.10/site-packages (from matplotlib>=3->pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (10.0.0)
Requirement already satisfied: contourpy>=1.0.1 in ./venv/lib/python3.10/site-packages (from matplotlib>=3->pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (1.1.0)
Requirement already satisfied: packaging>=20.0 in ./venv/lib/python3.10/site-packages (from matplotlib>=3->pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (23.1)
Requirement already satisfied: cycler>=0.10 in ./venv/lib/python3.10/site-packages (from matplotlib>=3->pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (0.11.0)
Requirement already satisfied: kiwisolver>=1.0.1 in ./venv/lib/python3.10/site-packages (from matplotlib>=3->pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (1.4.4)
Requirement already satisfied: fonttools>=4.22.0 in ./venv/lib/python3.10/site-packages (from matplotlib>=3->pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (4.40.0)
Requirement already satisfied: six>=1.5 in ./venv/lib/python3.10/site-packages (from python-dateutil>=2.8.2->pandas->sb-arch-opt[arch_sbo]) (1.16.0)
Requirement already satisfied: about-time==4.2.1 in ./venv/lib/python3.10/site-packages (from alive-progress->pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (4.2.1)
Requirement already satisfied: grapheme==0.6.0 in ./venv/lib/python3.10/site-packages (from alive-progress->pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (0.6.0)
Building wheels for collected packages: smt
  Building wheel for smt (pyproject.toml) ... error
  error: subprocess-exited-with-error

  × Building wheel for smt (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [124 lines of output]
      /tmp/pip-build-env-gg1qn9uu/overlay/lib/python3.10/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options
      !!

              ********************************************************************************
              Usage of dash-separated 'description-file' will not be supported in future
              versions. Please use the underscore name 'description_file' instead.

              By 2023-Sep-26, you need to update your project and remove deprecated calls
              or your builds will no longer be supported.

              See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
              ********************************************************************************

      !!
        opt = self.warn_dash_deprecation(opt, section)
      /tmp/pip-build-env-gg1qn9uu/overlay/lib/python3.10/site-packages/setuptools/config/setupcfg.py:293: _DeprecatedConfig: Deprecated config in `setup.cfg`
      !!

              ********************************************************************************
              The license_file parameter is deprecated, use license_files instead.

              By 2023-Oct-30, you need to update your project and remove deprecated calls
              or your builds will no longer be supported.

              See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
              ********************************************************************************

      !!
        parsed = self.parsers.get(option_name, lambda x: x)(value)
      running bdist_wheel
      running build
      running build_py
      creating build
      creating build/lib.linux-x86_64-cpython-310
      creating build/lib.linux-x86_64-cpython-310/smt
      copying smt/__init__.py -> build/lib.linux-x86_64-cpython-310/smt
      creating build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/rmtc.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/genn.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/idw.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/ls.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/qp.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/kpls.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/rbf.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/rmts.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/surrogate_model.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/rmtb.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/__init__.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/mgp.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/gekpls.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/krg.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/kplsk.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/krg_based.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      creating build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/tensor_product.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/ndim_step_function.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/sphere.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/ndim_robot_arm.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/mixed_cantilever_beam.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/welded_beam.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/water_flow.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/torsion_vibration.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/ndim_rosenbrock.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/problem.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/branin.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/rosenbrock.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/reduced_problem.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/water_flow_lfidelity.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/ndim_cantilever_beam.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/neural_network.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/robot_arm.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/lp_norm.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/wing_weight.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/hierarchical_goldstein.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/__init__.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/cantilever_beam.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      creating build/lib.linux-x86_64-cpython-310/smt/sampling_methods
      copying smt/sampling_methods/lhs.py -> build/lib.linux-x86_64-cpython-310/smt/sampling_methods
      copying smt/sampling_methods/random.py -> build/lib.linux-x86_64-cpython-310/smt/sampling_methods
      copying smt/sampling_methods/full_factorial.py -> build/lib.linux-x86_64-cpython-310/smt/sampling_methods
      copying smt/sampling_methods/sampling_method.py -> build/lib.linux-x86_64-cpython-310/smt/sampling_methods
      copying smt/sampling_methods/__init__.py -> build/lib.linux-x86_64-cpython-310/smt/sampling_methods
      creating build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/options_dictionary.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/line_search.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/misc.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/caching.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/linear_solvers.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/printer.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/silence.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/design_space.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/krg_sampling.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/sm_test_case.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/checks.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/kriging.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/__init__.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      creating build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      copying smt/utils/neural_net/loss.py -> build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      copying smt/utils/neural_net/model.py -> build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      copying smt/utils/neural_net/data.py -> build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      copying smt/utils/neural_net/metrics.py -> build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      copying smt/utils/neural_net/activation.py -> build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      copying smt/utils/neural_net/bwd_prop.py -> build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      copying smt/utils/neural_net/fwd_prop.py -> build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      copying smt/utils/neural_net/optimizer.py -> build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      copying smt/utils/neural_net/__init__.py -> build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      creating build/lib.linux-x86_64-cpython-310/smt/applications
      copying smt/applications/ego.py -> build/lib.linux-x86_64-cpython-310/smt/applications
      copying smt/applications/vfm.py -> build/lib.linux-x86_64-cpython-310/smt/applications
      copying smt/applications/mfkplsk.py -> build/lib.linux-x86_64-cpython-310/smt/applications
      copying smt/applications/mfkpls.py -> build/lib.linux-x86_64-cpython-310/smt/applications
      copying smt/applications/moe.py -> build/lib.linux-x86_64-cpython-310/smt/applications
      copying smt/applications/mfk.py -> build/lib.linux-x86_64-cpython-310/smt/applications
      copying smt/applications/application.py -> build/lib.linux-x86_64-cpython-310/smt/applications
      copying smt/applications/__init__.py -> build/lib.linux-x86_64-cpython-310/smt/applications
      copying smt/applications/mixed_integer.py -> build/lib.linux-x86_64-cpython-310/smt/applications
      running build_ext
      building 'smt.surrogate_models.rbfclib' extension
      creating build/temp.linux-x86_64-cpython-310
      creating build/temp.linux-x86_64-cpython-310/smt
      creating build/temp.linux-x86_64-cpython-310/smt/src
      creating build/temp.linux-x86_64-cpython-310/smt/src/rbf
      x86_64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ismt/src/rbf -I/tmp/pip-build-env-gg1qn9uu/overlay/lib/python3.10/site-packages/numpy/core/include -I/home/athul/Documents/sbarchopt/venv/include -I/usr/include/python3.10 -c smt/src/rbf/rbf.cpp -o build/temp.linux-x86_64-cpython-310/smt/src/rbf/rbf.o -std=c++11
      error: command 'x86_64-linux-gnu-gcc' failed: No such file or directory
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for smt
Failed to build smt
ERROR: Could not build wheels for smt, which is required to install pyproject.toml-based projects
athulpg007 commented 1 year ago

Tried the suggested solution here, it fixed the error: command 'x86_64-linux-gnu-gcc' failed: No such file or directory, but runs into a different error.

Requirement already satisfied: sb-arch-opt[arch_sbo] in ./venv/lib/python3.10/site-packages (1.1.4)
Requirement already satisfied: more-itertools~=9.1 in ./venv/lib/python3.10/site-packages (from sb-arch-opt[arch_sbo]) (9.1.0)
Requirement already satisfied: ConfigSpace~=0.6.1 in ./venv/lib/python3.10/site-packages (from sb-arch-opt[arch_sbo]) (0.6.1)
Requirement already satisfied: pandas in ./venv/lib/python3.10/site-packages (from sb-arch-opt[arch_sbo]) (2.0.3)
Requirement already satisfied: deprecated in ./venv/lib/python3.10/site-packages (from sb-arch-opt[arch_sbo]) (1.2.14)
Requirement already satisfied: pymoo~=0.6.0.1 in ./venv/lib/python3.10/site-packages (from sb-arch-opt[arch_sbo]) (0.6.0.1)
Requirement already satisfied: scipy in ./venv/lib/python3.10/site-packages (from sb-arch-opt[arch_sbo]) (1.11.1)
Requirement already satisfied: numpy in ./venv/lib/python3.10/site-packages (from sb-arch-opt[arch_sbo]) (1.25.0)
Requirement already satisfied: cached-property~=1.5 in ./venv/lib/python3.10/site-packages (from sb-arch-opt[arch_sbo]) (1.5.2)
Collecting numba
  Using cached numba-0.57.1-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (3.6 MB)
Collecting scikit-learn
  Using cached scikit_learn-1.3.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (10.8 MB)
Collecting smt~=2.0b5
  Using cached smt-2.0.tar.gz (272 kB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
Requirement already satisfied: pyparsing in ./venv/lib/python3.10/site-packages (from ConfigSpace~=0.6.1->sb-arch-opt[arch_sbo]) (3.1.0)
Requirement already satisfied: typing-extensions in ./venv/lib/python3.10/site-packages (from ConfigSpace~=0.6.1->sb-arch-opt[arch_sbo]) (4.7.1)
Requirement already satisfied: dill in ./venv/lib/python3.10/site-packages (from pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (0.3.6)
Requirement already satisfied: cma==3.2.2 in ./venv/lib/python3.10/site-packages (from pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (3.2.2)
Requirement already satisfied: autograd>=1.4 in ./venv/lib/python3.10/site-packages (from pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (1.6.2)
Requirement already satisfied: alive-progress in ./venv/lib/python3.10/site-packages (from pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (3.1.4)
Requirement already satisfied: matplotlib>=3 in ./venv/lib/python3.10/site-packages (from pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (3.7.1)
Collecting pyDOE2
  Using cached pyDOE2-1.3.0-py3-none-any.whl
Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.10/site-packages (from deprecated->sb-arch-opt[arch_sbo]) (1.15.0)
Collecting numpy
  Using cached numpy-1.24.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB)
Collecting llvmlite<0.41,>=0.40.0dev0
  Using cached llvmlite-0.40.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (42.1 MB)
Requirement already satisfied: pytz>=2020.1 in ./venv/lib/python3.10/site-packages (from pandas->sb-arch-opt[arch_sbo]) (2023.3)
Requirement already satisfied: tzdata>=2022.1 in ./venv/lib/python3.10/site-packages (from pandas->sb-arch-opt[arch_sbo]) (2023.3)
Requirement already satisfied: python-dateutil>=2.8.2 in ./venv/lib/python3.10/site-packages (from pandas->sb-arch-opt[arch_sbo]) (2.8.2)
Collecting joblib>=1.1.1
  Using cached joblib-1.3.1-py3-none-any.whl (301 kB)
Collecting threadpoolctl>=2.0.0
  Using cached threadpoolctl-3.1.0-py3-none-any.whl (14 kB)
Requirement already satisfied: future>=0.15.2 in ./venv/lib/python3.10/site-packages (from autograd>=1.4->pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (0.18.3)
Requirement already satisfied: pillow>=6.2.0 in ./venv/lib/python3.10/site-packages (from matplotlib>=3->pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (10.0.0)
Requirement already satisfied: contourpy>=1.0.1 in ./venv/lib/python3.10/site-packages (from matplotlib>=3->pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (1.1.0)
Requirement already satisfied: fonttools>=4.22.0 in ./venv/lib/python3.10/site-packages (from matplotlib>=3->pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (4.40.0)
Requirement already satisfied: cycler>=0.10 in ./venv/lib/python3.10/site-packages (from matplotlib>=3->pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (0.11.0)
Requirement already satisfied: kiwisolver>=1.0.1 in ./venv/lib/python3.10/site-packages (from matplotlib>=3->pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (1.4.4)
Requirement already satisfied: packaging>=20.0 in ./venv/lib/python3.10/site-packages (from matplotlib>=3->pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (23.1)
Requirement already satisfied: six>=1.5 in ./venv/lib/python3.10/site-packages (from python-dateutil>=2.8.2->pandas->sb-arch-opt[arch_sbo]) (1.16.0)
Requirement already satisfied: about-time==4.2.1 in ./venv/lib/python3.10/site-packages (from alive-progress->pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (4.2.1)
Requirement already satisfied: grapheme==0.6.0 in ./venv/lib/python3.10/site-packages (from alive-progress->pymoo~=0.6.0.1->sb-arch-opt[arch_sbo]) (0.6.0)
Building wheels for collected packages: smt
  Building wheel for smt (pyproject.toml) ... error
  error: subprocess-exited-with-error

  × Building wheel for smt (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [129 lines of output]
      /tmp/pip-build-env-bucs6scv/overlay/lib/python3.10/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options
      !!

              ********************************************************************************
              Usage of dash-separated 'description-file' will not be supported in future
              versions. Please use the underscore name 'description_file' instead.

              By 2023-Sep-26, you need to update your project and remove deprecated calls
              or your builds will no longer be supported.

              See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
              ********************************************************************************

      !!
        opt = self.warn_dash_deprecation(opt, section)
      /tmp/pip-build-env-bucs6scv/overlay/lib/python3.10/site-packages/setuptools/config/setupcfg.py:293: _DeprecatedConfig: Deprecated config in `setup.cfg`
      !!

              ********************************************************************************
              The license_file parameter is deprecated, use license_files instead.

              By 2023-Oct-30, you need to update your project and remove deprecated calls
              or your builds will no longer be supported.

              See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
              ********************************************************************************

      !!
        parsed = self.parsers.get(option_name, lambda x: x)(value)
      running bdist_wheel
      running build
      running build_py
      creating build
      creating build/lib.linux-x86_64-cpython-310
      creating build/lib.linux-x86_64-cpython-310/smt
      copying smt/__init__.py -> build/lib.linux-x86_64-cpython-310/smt
      creating build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/rmtc.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/genn.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/idw.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/ls.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/qp.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/kpls.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/rbf.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/rmts.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/surrogate_model.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/rmtb.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/__init__.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/mgp.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/gekpls.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/krg.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/kplsk.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      copying smt/surrogate_models/krg_based.py -> build/lib.linux-x86_64-cpython-310/smt/surrogate_models
      creating build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/tensor_product.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/ndim_step_function.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/sphere.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/ndim_robot_arm.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/mixed_cantilever_beam.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/welded_beam.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/water_flow.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/torsion_vibration.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/ndim_rosenbrock.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/problem.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/branin.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/rosenbrock.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/reduced_problem.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/water_flow_lfidelity.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/ndim_cantilever_beam.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/neural_network.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/robot_arm.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/lp_norm.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/wing_weight.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/hierarchical_goldstein.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/__init__.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      copying smt/problems/cantilever_beam.py -> build/lib.linux-x86_64-cpython-310/smt/problems
      creating build/lib.linux-x86_64-cpython-310/smt/sampling_methods
      copying smt/sampling_methods/lhs.py -> build/lib.linux-x86_64-cpython-310/smt/sampling_methods
      copying smt/sampling_methods/random.py -> build/lib.linux-x86_64-cpython-310/smt/sampling_methods
      copying smt/sampling_methods/full_factorial.py -> build/lib.linux-x86_64-cpython-310/smt/sampling_methods
      copying smt/sampling_methods/sampling_method.py -> build/lib.linux-x86_64-cpython-310/smt/sampling_methods
      copying smt/sampling_methods/__init__.py -> build/lib.linux-x86_64-cpython-310/smt/sampling_methods
      creating build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/options_dictionary.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/line_search.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/misc.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/caching.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/linear_solvers.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/printer.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/silence.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/design_space.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/krg_sampling.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/sm_test_case.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/checks.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/kriging.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      copying smt/utils/__init__.py -> build/lib.linux-x86_64-cpython-310/smt/utils
      creating build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      copying smt/utils/neural_net/loss.py -> build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      copying smt/utils/neural_net/model.py -> build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      copying smt/utils/neural_net/data.py -> build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      copying smt/utils/neural_net/metrics.py -> build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      copying smt/utils/neural_net/activation.py -> build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      copying smt/utils/neural_net/bwd_prop.py -> build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      copying smt/utils/neural_net/fwd_prop.py -> build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      copying smt/utils/neural_net/optimizer.py -> build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      copying smt/utils/neural_net/__init__.py -> build/lib.linux-x86_64-cpython-310/smt/utils/neural_net
      creating build/lib.linux-x86_64-cpython-310/smt/applications
      copying smt/applications/ego.py -> build/lib.linux-x86_64-cpython-310/smt/applications
      copying smt/applications/vfm.py -> build/lib.linux-x86_64-cpython-310/smt/applications
      copying smt/applications/mfkplsk.py -> build/lib.linux-x86_64-cpython-310/smt/applications
      copying smt/applications/mfkpls.py -> build/lib.linux-x86_64-cpython-310/smt/applications
      copying smt/applications/moe.py -> build/lib.linux-x86_64-cpython-310/smt/applications
      copying smt/applications/mfk.py -> build/lib.linux-x86_64-cpython-310/smt/applications
      copying smt/applications/application.py -> build/lib.linux-x86_64-cpython-310/smt/applications
      copying smt/applications/__init__.py -> build/lib.linux-x86_64-cpython-310/smt/applications
      copying smt/applications/mixed_integer.py -> build/lib.linux-x86_64-cpython-310/smt/applications
      running build_ext
      building 'smt.surrogate_models.rbfclib' extension
      creating build/temp.linux-x86_64-cpython-310
      creating build/temp.linux-x86_64-cpython-310/smt
      creating build/temp.linux-x86_64-cpython-310/smt/src
      creating build/temp.linux-x86_64-cpython-310/smt/src/rbf
      x86_64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ismt/src/rbf -I/tmp/pip-build-env-bucs6scv/overlay/lib/python3.10/site-packages/numpy/core/include -I/home/athul/Documents/sbarchopt/venv/include -I/usr/include/python3.10 -c smt/src/rbf/rbf.cpp -o build/temp.linux-x86_64-cpython-310/smt/src/rbf/rbf.o -std=c++11
      x86_64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ismt/src/rbf -I/tmp/pip-build-env-bucs6scv/overlay/lib/python3.10/site-packages/numpy/core/include -I/home/athul/Documents/sbarchopt/venv/include -I/usr/include/python3.10 -c smt/src/rbf/rbfclib.cpp -o build/temp.linux-x86_64-cpython-310/smt/src/rbf/rbfclib.o -std=c++11
      smt/src/rbf/rbfclib.cpp:35:10: fatal error: Python.h: No such file or directory
         35 | #include "Python.h"
            |          ^~~~~~~~~~
      compilation terminated.
      error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for smt
Failed to build smt
ERROR: Could not build wheels for smt, which is required to install pyproject.toml-based projects
jbussemaker commented 1 year ago

@athulpg007 thanks for catching these issues, I'm in contact with the SMT developers to see if I can fix this. The problem lies in that it tries to compile some files in SMT that are actually not needed by SBArchOpt.

To temporarily circumvent, maybe you can just locally clone and install smt dependencies: https://github.com/SMTorg/smt Then, pip install -e . and include the path to the smt files in your Python path. Sorry if this is too much work.

Somehow I don't have these problems in the automated tests in this repository... weird

athulpg007 commented 1 year ago

I cloned smt and tried the suggestion above and ran into the same issue as before:

      smt/src/rbf/rbfclib.cpp:35:10: fatal error: Python.h: No such file or directory
         35 | #include "Python.h"
            |          ^~~~~~~~~~
      compilation terminated.
      error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1

The suggested solution here solved the issue.

athulpg007 commented 1 year ago

This issue has been resolved.