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jcao89757 / TESSA

Mapping the Functional Landscape of TCR Repertoire
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Error on using ' Tessa_main.py' #14

Open shizhiwen1990 opened 7 months ago

shizhiwen1990 commented 7 months ago

Hi @jcao89757 , thanks for the great package and all your efforts in maintaining it!

I ran the relined code： “python3 Tessa_main.py -tcr ./example_data/example_TCRmeta.csv -model ./BriseisEncoder/TrainedEncoder.h5 -embeding_vectors ./BriseisEncoder/Atchley_factors.csv -output_TCR test.csv -output_VJ testVJ.csv -output_log test.log -exp ./example_data/example_exp.csv -output_tessa /path/to/tessa_results/ -within_sample_networks FALSE”

and the error was as follows: “ERROR: please input valid TCRs/embedding.”

This code generates the embedded TCRs file （test.csv）, but the running results are inconsistent with your example results, as follows:

image

Thanks, Ze Zhang

shizhiwen1990 commented 7 months ago

I have solved the problem: just upgrade TESSA to the latest version, thank you！