Closed minyan90 closed 8 years ago
Dear minyan90,
Thank you very much for testing geoRge. Looking at your error, I think that you do not have XCMS package installed. Use the following code to do it:
source("https://bioconductor.org/biocLite.R") biocLite("xcms")
geoRge needs to run on an xcmSet that it is created using XCMS R package, if you do not know what parameters to use check XCMS-Online or metabolomics forums.
If you encounter any other problems, do not hesistate to contact me.
Yours,
Jordi
2016-03-09 2:13 GMT+01:00 minyan90 notifications@github.com:
install_github("jcapelladesto/geoRge") Downloading GitHub repo jcapelladesto/geoRge@master from URL https://api.github.com/repos/jcapelladesto/geoRge/zipball/master Installing geoRge Skipping 1 unavailable package: xcms "C:/PROGRA~1/R/R-32~1.3/bin/x64/R" --no-site-file --no-environ --no-save --no-restore CMD INSTALL "C:/Users/win7/AppData/Local/Temp/RtmpCYK42y/devtoolsea878a818cf/jcapelladesto-geoRge-e1f4d4b" \ --library="C:/Users/win7/Documents/R/win-library/3.2" --install-tests ERROR: dependency 'xcms' is not available for package 'geoRge' removing 'C:/Users/win7/Documents/R/win-library/3.2/geoRge' 错误: Command failed (1) — Reply to this email directly or view it on GitHub https://github.com/jcapelladesto/geoRge/issues/6.
install_github("jcapelladesto/geoRge") Downloading GitHub repo jcapelladesto/geoRge@master from URL https://api.github.com/repos/jcapelladesto/geoRge/zipball/master Installing geoRge Skipping 1 unavailable package: xcms "C:/PROGRA~1/R/R-32~1.3/bin/x64/R" --no-site-file --no-environ --no-save --no-restore CMD INSTALL "C:/Users/win7/AppData/Local/Temp/RtmpCYK42y/devtoolsea878a818cf/jcapelladesto-geoRge-e1f4d4b" \ --library="C:/Users/win7/Documents/R/win-library/3.2" --install-tests
ERROR: dependency 'xcms' is not available for package 'geoRge'
— Reply to this email directly or view it on GitHub https://github.com/jcapelladesto/geoRge/issues/6.
Dear minyan90,
Thank you very much for testing geoRge. Looking at your error, I think that you do not have XCMS package installed. Use the following code to do it:
source("https://bioconductor.org/biocLite.R") biocLite("xcms")
geoRge needs to run on an xcmSet that it is created using XCMS R package, if you do not know what parameters to use check XCMS-Online or metabolomics forums.
If you encounter any other problems, do not hesistate to contact me.
Yours,
Jordi
2016-03-09 2:13 GMT+01:00 minyan90 notifications@github.com: