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jcapels
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PlantsSM
A package to expose Secondary Metabolism of plants with Machine Learning and Systems Biology
MIT License
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EC number prediction
#22
jcapels
closed
9 months ago
0
Compute dataset in batches
#21
jcapels
closed
1 year ago
0
[ADD] parallelism for Esm2 and TorchSpawner
#20
jcapels
closed
1 year ago
0
Pipeline
#19
jcapels
closed
1 year ago
0
[ADD] Base line models
#18
jcapels
closed
1 year ago
0
[ADD] implement PSSM features for evolutionary information
#17
jcapels
opened
1 year ago
0
[ADD] way of dealing with invalid instances
#16
jcapels
opened
2 years ago
0
[ADD] MultiInput dataset and did a major refactor in single input dataset
#15
jcapels
closed
2 years ago
0
[ADD] deepmol standardizers and featurizers
#14
jcapels
closed
2 years ago
0
There should be an option to be able to cope with embeddings/encodings without fixed length (padded sequences)
#13
jcapels
closed
2 years ago
0
[ADD] protein standardizer
#12
jcapels
closed
2 years ago
0
Implementation of bio embeddings
#11
jcapels
closed
2 years ago
0
[ADD] 3d datasets for RNNs and CNNs for sequences with different sizes
#10
jcapels
closed
2 years ago
1
[REFACTORING] Transformers not coping with 3-dimensional data from embeddings or one-hot encodings
#9
jcapels
closed
2 years ago
1
Moore dataset
#8
jcapels
closed
2 years ago
0
[REFACTOR] propythia packaging and functions
#7
jcapels
closed
2 years ago
1
[ADD] tests to unsupervised learning + refactor visualization methods
#6
jcapels
opened
2 years ago
0
[FIX] dataset structure and added integration tests
#5
jcapels
closed
2 years ago
0
Unsupervised excel reader
#4
jcapels
closed
2 years ago
0
Propythia wrappers
#3
jcapels
closed
2 years ago
0
[ADD] create uniprot api + [FIX] iloc in features and labels in dataset
#2
jcapels
closed
2 years ago
0
Develop
#1
jcapels
closed
2 years ago
0