Setup fails using a local installation from master of git repo

[adowling2]

Installation of nbpages:

(teaching) esc306856:nbpages adowling$ pip install -e .
Obtaining file:///Users/adowling/DowlingLab/Teaching/nbpages
Requirement already satisfied: nbconvert in /anaconda3/lib/python3.7/site-packages (from nbpaages==0.0.1.dev12) (5.4.1)
Requirement already satisfied: nbformat in /anaconda3/lib/python3.7/site-packages (from nbpaages==0.0.1.dev12) (4.4.0)
Collecting notedown (from nbpaages==0.0.1.dev12)
  Downloading https://files.pythonhosted.org/packages/d3/3a/d7c1817f3acb2e958b32fe85a35f52d270820fb9cebf1364b36c772cf3d0/notedown-1.5.1-py3-none-any.whl
Requirement already satisfied: mistune>=0.8.1 in /anaconda3/lib/python3.7/site-packages (from nbconvert->nbpaages==0.0.1.dev12) (0.8.4)
Requirement already satisfied: jinja2 in /anaconda3/lib/python3.7/site-packages (from nbconvert->nbpaages==0.0.1.dev12) (2.10)
Requirement already satisfied: pygments in /anaconda3/lib/python3.7/site-packages (from nbconvert->nbpaages==0.0.1.dev12) (2.3.1)
Requirement already satisfied: traitlets>=4.2 in /anaconda3/lib/python3.7/site-packages (from nbconvert->nbpaages==0.0.1.dev12) (4.3.2)
Requirement already satisfied: jupyter_core in /anaconda3/lib/python3.7/site-packages (from nbconvert->nbpaages==0.0.1.dev12) (4.4.0)
Requirement already satisfied: entrypoints>=0.2.2 in /anaconda3/lib/python3.7/site-packages (from nbconvert->nbpaages==0.0.1.dev12) (0.3)
Requirement already satisfied: bleach in /anaconda3/lib/python3.7/site-packages (from nbconvert->nbpaages==0.0.1.dev12) (3.1.0)
Requirement already satisfied: pandocfilters>=1.4.1 in /anaconda3/lib/python3.7/site-packages (from nbconvert->nbpaages==0.0.1.dev12) (1.4.2)
Requirement already satisfied: testpath in /anaconda3/lib/python3.7/site-packages (from nbconvert->nbpaages==0.0.1.dev12) (0.4.2)
Requirement already satisfied: defusedxml in /anaconda3/lib/python3.7/site-packages (from nbconvert->nbpaages==0.0.1.dev12) (0.5.0)
Requirement already satisfied: ipython-genutils in /anaconda3/lib/python3.7/site-packages (from nbformat->nbpaages==0.0.1.dev12) (0.2.0)
Requirement already satisfied: jsonschema!=2.5.0,>=2.4 in /anaconda3/lib/python3.7/site-packages (from nbformat->nbpaages==0.0.1.dev12) (3.0.1)
Requirement already satisfied: six in /anaconda3/lib/python3.7/site-packages (from notedown->nbpaages==0.0.1.dev12) (1.12.0)
Collecting pandoc-attributes (from notedown->nbpaages==0.0.1.dev12)
  Downloading https://files.pythonhosted.org/packages/c2/0a/442cc9237dc997cd88155bdcb54bf86e703e699881f4134ecb733ccd670c/pandoc-attributes-0.1.7.tar.gz
Requirement already satisfied: MarkupSafe>=0.23 in /anaconda3/lib/python3.7/site-packages (from jinja2->nbconvert->nbpaages==0.0.1.dev12) (1.1.1)
Requirement already satisfied: decorator in /anaconda3/lib/python3.7/site-packages (from traitlets>=4.2->nbconvert->nbpaages==0.0.1.dev12) (4.4.0)
Requirement already satisfied: webencodings in /anaconda3/lib/python3.7/site-packages (from bleach->nbconvert->nbpaages==0.0.1.dev12) (0.5.1)
Requirement already satisfied: attrs>=17.4.0 in /anaconda3/lib/python3.7/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat->nbpaages==0.0.1.dev12) (19.1.0)
Requirement already satisfied: pyrsistent>=0.14.0 in /anaconda3/lib/python3.7/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat->nbpaages==0.0.1.dev12) (0.14.11)
Requirement already satisfied: setuptools in /anaconda3/lib/python3.7/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat->nbpaages==0.0.1.dev12) (40.8.0)
Building wheels for collected packages: pandoc-attributes
  Building wheel for pandoc-attributes (setup.py) ... done
  Stored in directory: /Users/adowling/Library/Caches/pip/wheels/0f/43/b0/252730521a965a687748f0be111073e67ba229e640d147e65f
Successfully built pandoc-attributes
Installing collected packages: pandoc-attributes, notedown, nbpaages
  Running setup.py develop for nbpaages
Successfully installed nbpaages notedown-1.5.1 pandoc-attributes-0.1.7

Attempting to configure my first repo:

(teaching) esc306856:cbe67701-uncertainty-quantification adowling$ nbpages --setup
Traceback (most recent call last):
  File "/anaconda3/bin/nbpages", line 11, in <module>
    load_entry_point('nbpaages', 'console_scripts', 'nbpages')()
  File "/anaconda3/lib/python3.7/site-packages/pkg_resources/__init__.py", line 489, in load_entry_point
    return get_distribution(dist).load_entry_point(group, name)
  File "/anaconda3/lib/python3.7/site-packages/pkg_resources/__init__.py", line 2793, in load_entry_point
    return ep.load()
  File "/anaconda3/lib/python3.7/site-packages/pkg_resources/__init__.py", line 2411, in load
    return self.resolve()
  File "/anaconda3/lib/python3.7/site-packages/pkg_resources/__init__.py", line 2417, in resolve
    module = __import__(self.module_name, fromlist=['__name__'], level=0)
  File "/Users/adowling/DowlingLab/Teaching/nbpages/src/nbpages/__main__.py", line 7, in <module>
    from .nbcollection import NbCollection
  File "/Users/adowling/DowlingLab/Teaching/nbpages/src/nbpages/nbcollection.py", line 30, in <module>
    assert os.path.exists(config_file), f"configuration file {config_file} not found"
AssertionError: configuration file nbpages.cfg not found

[jckantor]

Problem was caused by situation requiring a circular import. Fixed by delaying import of .nbcollection in main.py. Will eventually be resolved by reorganizing the use of configuration information.

[adowling2]

I am confirming this worked. Here is the output:

(teaching) esc306856:cbe67701-uncertainty-quantification adowling$ nbpages --setup
- creating nbpages.cfg from .git/config
- writing nbpages.cfg
- notebooks directory already exists
- templates directory already exists
- writing templates/notebook_header.tpl
- writing templates/index.md.tpl
- writing templates/nbpages.tpl
- docs directory already exists