List of transects removed from Mid-Atlantic dynamic occupancy model

[jclbrooks]

We removed the following transects from the dynamic occupancy model:

Removed in combine_obs_data.R, not included in covariate objects because no lat/lon

• "MRC2T1" - no lat/lon data
• "PR300" - no lat/lon data
• "MRC3TL" no lat/lon data
• "PR" - no lat/lon data

Removed in prep_occ.R, removed from objects df_occ, featureids_matched, spp_dist

• "COST28-2" - bad lat/lon data
• "Fairway18-1" - bad lat/lon data
• "Picnic 21-1" - bad lat/lon data
• "COST21-3" - bad (or no?) lat/lon data, not included in dataframes?? but included in code to remove just in case
• "COST8-3" - bad lat/lon data
• "W Shale North_1D" - only one observation from the only transect on one stream, too little data

[jclbrooks]

I also removed "PRW227-A2" and "PRW263-A1" from all landscape covariate data. This was removed from object landscape_vars in line 37 of format_landscape_data.R. I removed it from this object because landscape_vars is one of the initial objects used several more times to create other objects/check matching. These two sites were removed because there was only one observation in total from each over the course of all field seasons, with both observing Rana clamitans (not one of our target species). It was automatically removed from the occupancy data because we filtered to our target species in line 446 of combine_obs_data.R.

[jclbrooks]

Also removed"PRW227-A2" and "PRW263-A1" from objects df_occ, featureids_matched, spp_dist in prep_occ.R just to be safe. Was probably only necessary to filter out of featureids_matched (spp_dist is left joined to featureids_matched in prep_occ.R, essentially nulling the previous removal of these transects from the initial landscape_vars object if featureids_matched was not fixed), but just wanted to make sure they were removed.