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jcouto / wfield

Tools to process widefield data
GNU General Public License v3.0
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question local implementation #5

Open wAOndering opened 2 years ago

wAOndering commented 2 years ago

Hey Joao, thanks a lot for the code and the pipeline it looks great. I had a question regarding implementing locally without using NeuroCASS. Can the GUI be used locally as well? Thanks

jcouto commented 2 years ago

Hi, there are some parts that are implemented locally through the command line (not the neurocaas GUI).

The alignment GUI, for instance, can be ran using the command wfield open_raw <foldername>.

Motion correction, dimensional reduction methods (approximate SVD) and hemodynamics compensation are accessible in the command line (see wfield --help), but the PMD and locaNMF are on separate packages. I had plans to expose the full analysis from the command line, would that be useful?

wAOndering commented 2 years ago

Hi Joao, Sorry for the late reply I somehow missed the notification for your response. Thanks so much and I agree with you exposing the full analysis from the command would be useful. Thanks again so much for the package! Much appreciated!