jcrozum / biobalm

The biologist's Boolean attractor landscape mapper, building Waddington landscapes from Boolean networks.
https://jcrozum.github.io/biobalm/
MIT License
2 stars 0 forks source link

Release setup #115

Closed jcrozum closed 7 months ago

jcrozum commented 7 months ago

Changes package name to biobalm and adds workflow scripts to automatically upload to pypi when changes are made to main.

github-actions[bot] commented 7 months ago

Coverage

Coverage Report
FileStmtsMissCoverMissing
biobalm
   control.py1141488%107, 119, 125, 129, 134, 143–159, 477, 480, 493
   interaction_graph_utils.py38489%11–13, 151–152
   motif_avoidant.py148299%26, 181
   petri_net_translation.py1491193%22–26, 79, 136, 305–306, 330–331, 340, 449
   space_utils.py132497%26–28, 414, 462
   succession_diagram.py2801794%6, 188–193, 201, 261–262, 272, 278, 394, 584, 660, 851, 889, 926
   symbolic_utils.py26388%10–12, 102
   trappist_core.py1833084%14–18, 55, 57, 92, 168, 215, 217, 219, 247–250, 254–256, 276–282, 340, 342, 372, 420, 422, 453, 506
biobalm/_sd_algorithms
   compute_attractor_seeds.py30197%8
   expand_attractor_seeds.py51590%6, 42, 97–102
   expand_bfs.py28196%6
   expand_dfs.py30197%6
   expand_minimal_spaces.py37295%6, 31
   expand_source_SCCs.py122497%14–16, 86, 131
   expand_to_target.py31390%6, 38, 43
TOTAL146010293% 

Tests Skipped Failures Errors Time
361 0 :zzz: 0 :x: 0 :fire: 37.665s :stopwatch:
jcrozum commented 7 months ago

Here's the pypi website: https://pypi.org/project/biobalm/

We should rename the repo if we are satisfied, and also make sure the docs links work, etc.