jcrozum / pystablemotifs

Python library for attractor identification and control in Boolean networks
MIT License
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Include number of attractors for attractor_candidate_summary #14

Closed jgtz closed 4 years ago

jgtz commented 4 years ago

Calling attractor_candidate_summary() from Succession.build_succession_diagram gives the Logically Fixed Nodes + the rules of the nodes that oscillate. Adding before that a summary with the number of attractors would be helpful in general and also for the manual benchmarking.

jcrozum commented 4 years ago

Good idea! I just implemented this in the succession-diagram-improvements branch. Let me know if that's enough info for what you need.

jcrozum commented 4 years ago

Example output: Found 3 guaranteed attractor space(s) and 0 possible attractor space(s). Found 0 steady state(s) and 3 complex attractor(s) in the guaranteed attractor space(s).

jgtz commented 4 years ago

Yes, this is great!