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jcrozum / pystablemotifs

Python library for attractor identification and control in Boolean networks
MIT License
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error using AttractorRepertoire #74

Closed alekhyaa2 closed 2 years ago

alekhyaa2 commented 2 years ago

I am using the below command to print the attractors for my system. ar=sm.AttractorRepertoire.from_primes(primes,max_simulate_size=5)

I am getting the following error.

ERROR: trap_spaces is removed, use compute_trap_spaces An exception has occurred, use %tb to see the full traceback. SystemExit: 1

Could please help me understand what this error is about?

jcrozum commented 2 years ago

This problem stems from a version mismatch between pystablemotifs and pyboolnet; please make sure you are using the most recent version of both of these.

alekhyaa2 commented 2 years ago

I am using pyboolnet - version 3.0.9 and pystablemotifs 3.0.2.

jcrozum commented 2 years ago

I see; the latest release is actually 3.0.3. I created a new release on GitHub, and will update PyPI tomorrow. For now, you can run this to update:

pip uninstall pystablemotifs
pip install git+https://github.com/jcrozum/pystablemotifs
alekhyaa2 commented 2 years ago

It works now after getting the latest version of Pystablemotifs. Thank you for your quick help!

jcrozum commented 2 years ago

Glad to help! The PyPI version should also be 3.0.3 now.