jcrozum / pystablemotifs

Python library for attractor identification and control in Boolean networks
MIT License
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Simulation cutoffs #79

Closed kyuhyongpark closed 2 years ago

kyuhyongpark commented 2 years ago

28 Simulation cutoffs

max_simulation_size_vc was added to class MotifReduction in reduction.py and every function/class that calls it. Maximum number of variables for which to brute-force build a state transition graph for the vc-reduced space (the default is the same as max_simulate_size).

max_in_degree parameter was added to deletion_reduction() in reduction.py and every function/class that calls it. Will not try to delete nodes that will result an increase in the in-degree of the downstream node so that it has in-degree larger than this. (the default is float('inf')).