jcu23686 / BINF8940

GENE(BINF)8940E class repository
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Homework_1 #1

Open jcu23686 opened 2 years ago

jcu23686 commented 2 years ago

1.) x86_64-redhat-linux-gnu 3.10.0-1127.13.1.el7.x86_64

2.) /usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/puppetlabs/bin:/opt/apps/slurm/prod/bin:/usr/tools/bin:/home/jcu23686/.local/bin:/home/jcu23686/bin

3.) The curl command is used to download or upload data to a server. -s is used to make the curl command silent which won't display details and errors in output. The next part of the command is an URL which will have its contents transferred. Next there is a pipe which lets the output of one command be the input of another. With the use of the pipe the output from the previous commands are inputted to "gunzip -c" which allows the compressed file to be decompressed into another location. Lastly ">" redirects the output from the BASH command to the file "ecoli_MG1655.gff. As a result of the command contents from the ensembl genome browser can de downloaded and saved as ecoli_MG1655.gff. The contents of .gff file can then be worked at this point going forward.

4.) I identified 4141 CDS featured in my analysis

5.) https://github.com/jcu23686/BINF8940/blob/main/homework1.sh

6.) 32c2936a4548202776ab1e7bc1222404f19676bc https://github.com/jcu23686/BINF8940/commits/main/homework1.sh

JingxuanChen7 commented 2 years ago
  1. Close. What you provided is the Kernel version, but the question was asking about the general Linux OS version. Here is a webpage about the difference between the two. Linux version could be inspected using the command more /etc/*release
    
    (base) cbergman@teach-sub1 ~$ more /etc/*release
    ::::::::::::::
    /etc/centos-release
    ::::::::::::::
    CentOS Linux release 7.8.2003 (Core)
    ::::::::::::::
    /etc/os-release
    ::::::::::::::
    NAME="CentOS Linux"
    VERSION="7 (Core)"
    ID="centos"
    ID_LIKE="rhel fedora"
    VERSION_ID="7"
    PRETTY_NAME="CentOS Linux 7 (Core)"
    ANSI_COLOR="0;31"
    CPE_NAME="cpe:/o:centos:centos:7"
    HOME_URL="https://www.centos.org/"
    BUG_REPORT_URL="https://bugs.centos.org/"

CENTOS_MANTISBT_PROJECT="CentOS-7" CENTOS_MANTISBT_PROJECT_VERSION="7" REDHAT_SUPPORT_PRODUCT="centos" REDHAT_SUPPORT_PRODUCT_VERSION="7"

:::::::::::::: /etc/redhat-release :::::::::::::: CentOS Linux release 7.8.2003 (Core) :::::::::::::: /etc/system-release :::::::::::::: CentOS Linux release 7.8.2003 (Core)


2. Correct
3. Correct
4. Correct
5. Correct
6. Correct

@jcu23686 Great job! Please feel free to let me know if you have any other questions.