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jcu23686 / BINF8940

GENE(BINF)8940E class repository
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Homework_2 #2

Open jcu23686 opened 2 years ago

jcu23686 commented 2 years ago

1.) CDS regions: e_coli_MG1655_finalStats.bed

seq C G

total 1047193 1042098 prcnt 0.2601 0.2589

Intergenic regions: e_coli_MG1655_intergenic_finalStats.bed

seq C G

total 138618 140790 prcnt 0.2170 0.2204

2.) https://github.com/jcu23686/BINF8940/blob/main/homework2.sh

3.) 3aecacae365147857da169eedafdb6ab4e1da4c8 b610a1df271384ed743e7b2c3f3e26da1bb16781 24facca2b22b68b45bbc5ce10da59f1c36c1fd4e

JingxuanChen7 commented 2 years ago
  1. All numbers are correct. GC content mean the summation for the percentage of either G or C, so you may add up the percentages you provided for CDS and intergenic regions respectively, i.e, 51.9% for CDS and 43.74% for intergenic region.
  2. Correct
  3. Correct. Actually you could only attach the latest commit rather than all commits, i.e, https://github.com/jcu23686/BINF8940/commit/24facca2b22b68b45bbc5ce10da59f1c36c1fd4e

@jcu23686 Perfect job! Please feel free to let me know if you have any questions.

PS: A small suggestion for your script: You could add one line cd $OUTDIR before curl to save all the intermediate files and results to /work/gene8940/jcu23686/homework2. Otherwise all the outputs would go into the folder from where your script was submitted.