doesn't start "run.bat" (Windows 10)

jdber1 / opendrop

OpenDrop pendant drop tensiometry software

GNU General Public License v3.0

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doesn't start "run.bat" (Windows 10) #1

Closed ymkim2 closed 8 years ago

ymkim2 commented 8 years ago

I just installed Python Anaconda 3 and Opencv3.0, on Windows 10. I followed instruction of copy one file on site-package folder. And I double clicked the "run.bat" file. However, it doesn't start. Please help. Thank you in advance.

jdber1 commented 8 years ago

Hello,

Do you get an error message, or does nothing happen at all? If you are getting an error message are you able to send it to us? Unfortunately we have not yet tested OpenDrop on Windows 10, but we are hoping to very shortly.

Regards, Joe

On Wed, Dec 16, 2015 at 12:10 PM, ymkim2 notifications@github.com wrote:

I just installed Python Anaconda 3 and Opencv30, on Windows 10 I followed instruction of copy one file on site-package folder And I double clicked the "runbat" file However, it doesn't start Please help Thank you in advance

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1.

ymkim2 commented 8 years ago

Hello Joe,

There was no error message. It doesn't happen anything at all.

I hope it's not windows 10 compatibility issue (I have already suffered enough).

Thanks, Yongman

Yongman Kim, Ph. D Senior Scientific Engineer Associate Earth Science Division Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720 Tel.: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Dec 15, 2015 at 5:21 PM, jdber1 notifications@github.com wrote:

Hello,

Do you get an error message, or does nothing happen at all? If you are getting an error message are you able to send it to us? Unfortunately we have not yet tested OpenDrop on Windows 10, but we are hoping to very shortly.

Regards, Joe

On Wed, Dec 16, 2015 at 12:10 PM, ymkim2 notifications@github.com wrote:

I just installed Python Anaconda 3 and Opencv30, on Windows 10 I followed instruction of copy one file on site-package folder And I double clicked the "runbat" file However, it doesn't start Please help Thank you in advance

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1.

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-164953887.

jdber1 commented 8 years ago

Hi Yongman,

Ok thanks for that. We have not yet got our hands on a machine running Windows 10. Let us track one down and we will get you instructions on how to run opendrop on your computer (hopefully by the end of the year).

Regards, Joe

On Wed, Dec 16, 2015 at 12:26 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

There was no error message. It doesn't happen anything at all.

I hope it's not windows 10 compatibility issue (I have already suffered enough).

Thanks, Yongman

Yongman Kim, Ph. D Senior Scientific Engineer Associate Earth Science Division Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720 Tel.: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Dec 15, 2015 at 5:21 PM, jdber1 notifications@github.com wrote:

Hello,

Do you get an error message, or does nothing happen at all? If you are getting an error message are you able to send it to us? Unfortunately we have not yet tested OpenDrop on Windows 10, but we are hoping to very shortly.

Regards, Joe

On Wed, Dec 16, 2015 at 12:10 PM, ymkim2 notifications@github.com wrote:

I just installed Python Anaconda 3 and Opencv30, on Windows 10 I followed instruction of copy one file on site-package folder And I double clicked the "runbat" file However, it doesn't start Please help Thank you in advance

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1.

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-164953887.

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-164954590.

jdber1 commented 8 years ago

Dear Yongman,

We have located a computer running Windows 10, and have had no trouble setting up OpenDrop to run correctly. Are you able to run OpenDrop from a command prompt so that we can see what error you are getting? To do so, right click on the Windows icon, and choose "Command Prompt". Next, cd to the directory where your installation resides. Finally, type "python opendrop.py" to run OpenDrop. An error message should be displayed: can you please send this so we can correctly diagnose the problem?

Regards, Joe

On Wed, Dec 16, 2015 at 12:28 PM, Joe Berry joe.d.berry@gmail.com wrote:

Hi Yongman,

Ok thanks for that. We have not yet got our hands on a machine running Windows 10. Let us track one down and we will get you instructions on how to run opendrop on your computer (hopefully by the end of the year).

Regards, Joe

On Wed, Dec 16, 2015 at 12:26 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

There was no error message. It doesn't happen anything at all.

I hope it's not windows 10 compatibility issue (I have already suffered enough).

Thanks, Yongman

Yongman Kim, Ph. D Senior Scientific Engineer Associate Earth Science Division Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720 Tel.: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Dec 15, 2015 at 5:21 PM, jdber1 notifications@github.com wrote:

Hello,

Do you get an error message, or does nothing happen at all? If you are getting an error message are you able to send it to us? Unfortunately we have not yet tested OpenDrop on Windows 10, but we are hoping to very shortly.

Regards, Joe

On Wed, Dec 16, 2015 at 12:10 PM, ymkim2 notifications@github.com wrote:

I just installed Python Anaconda 3 and Opencv30, on Windows 10 I followed instruction of copy one file on site-package folder And I double clicked the "runbat" file However, it doesn't start Please help Thank you in advance

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1.

— Reply to this email directly or view it on GitHub <https://github.com/ricotabor/opendrop/issues/1#issuecomment-164953887 .

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-164954590.

ymkim2 commented 8 years ago

Hello Joe,

Happy New Year~!

Please see the screen image attached, error message from the "Command Prompt" I checked the "Modules" folder, and there is 'de_YoungLaplace.py' and 'de_YoungLaplace.pyc' file.

Thanks, Yongman

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Mon, Dec 21, 2015 at 8:39 PM, jdber1 notifications@github.com wrote:

Dear Yongman,

We have located a computer running Windows 10, and have had no trouble setting up OpenDrop to run correctly. Are you able to run OpenDrop from a command prompt so that we can see what error you are getting? To do so, right click on the Windows icon, and choose "Command Prompt". Next, cd to the directory where your installation resides. Finally, type "python opendrop.py" to run OpenDrop. An error message should be displayed: can you please send this so we can correctly diagnose the problem?

Regards, Joe

On Wed, Dec 16, 2015 at 12:28 PM, Joe Berry joe.d.berry@gmail.com wrote:

Hi Yongman,

Ok thanks for that. We have not yet got our hands on a machine running Windows 10. Let us track one down and we will get you instructions on how to run opendrop on your computer (hopefully by the end of the year).

Regards, Joe

On Wed, Dec 16, 2015 at 12:26 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

There was no error message. It doesn't happen anything at all.

I hope it's not windows 10 compatibility issue (I have already suffered enough).

Thanks, Yongman

Yongman Kim, Ph. D Senior Scientific Engineer Associate Earth Science Division Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720 Tel.: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Dec 15, 2015 at 5:21 PM, jdber1 notifications@github.com wrote:

Hello,

Do you get an error message, or does nothing happen at all? If you are getting an error message are you able to send it to us? Unfortunately we have not yet tested OpenDrop on Windows 10, but we are hoping to very shortly.

Regards, Joe

On Wed, Dec 16, 2015 at 12:10 PM, ymkim2 notifications@github.com wrote:

I just installed Python Anaconda 3 and Opencv30, on Windows 10 I followed instruction of copy one file on site-package folder And I double clicked the "runbat" file However, it doesn't start Please help Thank you in advance

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1.

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-164953887 .

— Reply to this email directly or view it on GitHub <https://github.com/ricotabor/opendrop/issues/1#issuecomment-164954590 .

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-166503468.

jdber1 commented 8 years ago

Hi Yongman,

Happy new year to you too. I can't see any image - are you able to reattach? If you are having problems with github, email the image directly to opendropdev@gmail.com.

Cheers, Joe

ymkim2 commented 8 years ago

Here is the image.

[image: Inline image 1]

And, the error message says:

Trackback (most recent call last): File "opendrop.py", line 16, in from modules, classes import ExperimentalSetup, ExperimentalDrop, DropData, Tolerances File "C:\options\opendrop-1.1\modules\classes.py", line 3, in from de_YoungLaplace import ylderiv ImportError: No module named 'de_YoungLaplace'

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Mon, Jan 4, 2016 at 2:46 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Happy new year to you too. I can't see any image - are you able to reattach? If you are having problems with github, email the image directly to opendropdev@gmail.com.

Cheers, Joe

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-168835888.

jdber1 commented 8 years ago

Hi Yongman,

In the screenshot you sent, the backslashes in the pathname appear as symbols. From previously reported issues, this seems to be a locale/language issue. It appears as though python is not recognising the pathname due to the presence of this symbol. Are you able to change this so that the path appears correctly and then retry?

Cheers, Joe

ymkim2 commented 8 years ago

Hello Joe,

Even after the locale/language was changed to English only, I have the same error message (except with backslashes instead of symbols).

Please see the image below.

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Mon, Jan 4, 2016 at 3:09 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

In the screenshot you sent, the backslashes in the pathname appear as symbols. From previously reported issues, this seems to be a locale/language issue. It appears as though python is not recognising the pathname due to the presence of this symbol. Are you able to change this so that the path appears correctly and then retry?

Cheers, Joe

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-168840293.

ymkim2 commented 8 years ago

Hi Yongman,

Ok thanks for that. Can you tell me a little more about your installation procedure? Did you follow the instructions in our readme, or did you already have python installed?

Also, from the command prompt, can you: 1) run python with the command "python" 2) type "import sys" 3) type "print (sys.version)" 4) send us the output from this command

Cheers, Joe

On Tue, Jan 5, 2016 at 10:54 AM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

Even after the locale/language was changed to English only, I have the same error message (except with backslashes instead of symbols).

Please see the image below.

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Mon, Jan 4, 2016 at 3:09 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

In the screenshot you sent, the backslashes in the pathname appear as symbols. From previously reported issues, this seems to be a locale/language issue. It appears as though python is not recognising the pathname due to the presence of this symbol. Are you able to change this so that the path appears correctly and then retry?

Cheers, Joe

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-168840293.

ymkim2 commented 8 years ago

Hello Joe,

I followed the readme instruction, since it was my very first time to use the python program.

And the python prints:

3.5.1 Anaconda 2.4.1 (64-bit) (default, Dec 7 2015, 15:00:12) [MSC v.1900 64 bit (AMD64)]

[image: Inline image 1]

Thanks, Yongman

Yongman Kim, Ph. D Senior Scientific Engineer Associate Earth Science Division Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720 Tel.: 510-486-4566

Email: ymkim@lbl.gov

On Mon, Jan 4, 2016 at 4:06 PM, Joe Berry joe.d.berry@gmail.com wrote:

Hi Yongman,

Ok thanks for that. Can you tell me a little more about your installation procedure? Did you follow the instructions in our readme, or did you already have python installed?

Also, from the command prompt, can you: 1) run python with the command "python" 2) type "import sys" 3) type "print (sys.version)" 4) send us the output from this command

Cheers, Joe

On Tue, Jan 5, 2016 at 10:54 AM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

Even after the locale/language was changed to English only, I have the same error message (except with backslashes instead of symbols).

Please see the image below.

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Mon, Jan 4, 2016 at 3:09 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

In the screenshot you sent, the backslashes in the pathname appear as symbols. From previously reported issues, this seems to be a locale/language issue. It appears as though python is not recognising the pathname due to the presence of this symbol. Are you able to change this so that the path appears correctly and then retry?

Cheers, Joe

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-168840293.

ymkim2 commented 8 years ago

Hi Yongman,

You have installed python 3.5, which may explain the issues you are having. We recommend that you install python 2.7 (we have not done any testing with 3.5). Can you uninstall your python distribution and reinstall using the python 2.7 package available on the Anaconda website (see our readme on github), and then try again?

Cheers, Joe

On Tue, Jan 5, 2016 at 11:13 AM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I followed the readme instruction, since it was my very first time to use the python program.

And the python prints:

3.5.1 Anaconda 2.4.1 (64-bit) (default, Dec 7 2015, 15:00:12) [MSC v.1900 64 bit (AMD64)]

[image: Inline image 1]

Thanks, Yongman

Yongman Kim, Ph. D Senior Scientific Engineer Associate Earth Science Division Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720 Tel.: 510-486-4566

Email: ymkim@lbl.gov

On Mon, Jan 4, 2016 at 4:06 PM, Joe Berry joe.d.berry@gmail.com wrote:

Hi Yongman,

Ok thanks for that. Can you tell me a little more about your installation procedure? Did you follow the instructions in our readme, or did you already have python installed?

Also, from the command prompt, can you: 1) run python with the command "python" 2) type "import sys" 3) type "print (sys.version)" 4) send us the output from this command

Cheers, Joe

On Tue, Jan 5, 2016 at 10:54 AM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

Even after the locale/language was changed to English only, I have the same error message (except with backslashes instead of symbols).

Please see the image below.

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Mon, Jan 4, 2016 at 3:09 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

In the screenshot you sent, the backslashes in the pathname appear as symbols. From previously reported issues, this seems to be a locale/language issue. It appears as though python is not recognising the pathname due to the presence of this symbol. Are you able to change this so that the path appears correctly and then retry?

Cheers, Joe

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-168840293 .

ymkim2 commented 8 years ago

Hello Joe,

I installed python 2.7.11, and tried it again. However, I got new error message that no module named numpy.

[image: Inline image 1]

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Mon, Jan 4, 2016 at 4:23 PM, Joe Berry joe.d.berry@gmail.com wrote:

Hi Yongman,

You have installed python 3.5, which may explain the issues you are having. We recommend that you install python 2.7 (we have not done any testing with 3.5). Can you uninstall your python distribution and reinstall using the python 2.7 package available on the Anaconda website (see our readme on github), and then try again?

Cheers, Joe

On Tue, Jan 5, 2016 at 11:13 AM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I followed the readme instruction, since it was my very first time to use the python program.

And the python prints:

3.5.1 Anaconda 2.4.1 (64-bit) (default, Dec 7 2015, 15:00:12) [MSC v.1900 64 bit (AMD64)]

[image: Inline image 1]

Thanks, Yongman

Yongman Kim, Ph. D Senior Scientific Engineer Associate Earth Science Division Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720 Tel.: 510-486-4566

Email: ymkim@lbl.gov

On Mon, Jan 4, 2016 at 4:06 PM, Joe Berry joe.d.berry@gmail.com wrote:

Hi Yongman,

Ok thanks for that. Can you tell me a little more about your installation procedure? Did you follow the instructions in our readme, or did you already have python installed?

Also, from the command prompt, can you: 1) run python with the command "python" 2) type "import sys" 3) type "print (sys.version)" 4) send us the output from this command

Cheers, Joe

On Tue, Jan 5, 2016 at 10:54 AM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

Even after the locale/language was changed to English only, I have the same error message (except with backslashes instead of symbols).

Please see the image below.

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Mon, Jan 4, 2016 at 3:09 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

In the screenshot you sent, the backslashes in the pathname appear as symbols. From previously reported issues, this seems to be a locale/language issue. It appears as though python is not recognising the pathname due to the presence of this symbol. Are you able to change this so that the path appears correctly and then retry?

Cheers, Joe

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-168840293 .

jdber1 commented 8 years ago

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example: http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

ymkim2 commented 8 years ago

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example: http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows .

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442.

jdber1 commented 8 years ago

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 notifications@github.com wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows .

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442.

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753.

ymkim2 commented 8 years ago

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 notifications@github.com wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub <https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442 .

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753.

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-169180966.

ymkim2 commented 8 years ago

there is no numpy folder under site-packages, either.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:00 PM, Yongman Kim ymkim@lbl.gov wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 notifications@github.com wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442>.

— Reply to this email directly or view it on GitHub <https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753 .

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-169180966.

jdber1 commented 8 years ago

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 notifications@github.com wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 notifications@github.com wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442 .

— Reply to this email directly or view it on GitHub <https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753 .

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-169180966.

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-169183969.

jdber1 commented 8 years ago

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry joe.d.berry@gmail.com wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 notifications@github.com wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 notifications@github.com wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442 .

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753>.

— Reply to this email directly or view it on GitHub <https://github.com/ricotabor/opendrop/issues/1#issuecomment-169180966 .

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-169183969.

ymkim2 commented 8 years ago

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry joe.d.berry@gmail.com wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 notifications@github.com wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 notifications@github.com wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442 .

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753>.

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169180966 .

— Reply to this email directly or view it on GitHub <https://github.com/ricotabor/opendrop/issues/1#issuecomment-169183969 .

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-169186834.

jdber1 commented 8 years ago

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry joe.d.berry@gmail.com wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 notifications@github.com wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 notifications@github.com wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442 .

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753 .

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169180966 .

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169183969 .

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-169186834.

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-169188959.

ymkim2 commented 8 years ago

Hello Joe,

Yes, I had tried conda the first, but nothing happened.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:24 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry joe.d.berry@gmail.com wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 notifications@github.com wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 <notifications@github.com

wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442

.

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753 .

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169180966 .

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169183969 .

— Reply to this email directly or view it on GitHub <https://github.com/ricotabor/opendrop/issues/1#issuecomment-169186834 .

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-169188959.

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-169189587.

jdber1 commented 8 years ago

Hi Yongman,

Can you tell me exactly which Anaconda package you installed? Can you copy/paste the filename? It seems as if your installation has not worked.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:28 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

Yes, I had tried conda the first, but nothing happened.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:24 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry joe.d.berry@gmail.com wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 notifications@github.com wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 < notifications@github.com

wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442

.

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753 .

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169180966

.

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169183969 .

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169186834 .

— Reply to this email directly or view it on GitHub <https://github.com/ricotabor/opendrop/issues/1#issuecomment-169188959 .

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-169189587.

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-169190146.

ymkim2 commented 8 years ago

Hello Joe,

It's a windows installer package "python-2.7.11.msi" from the python website.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:30 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Can you tell me exactly which Anaconda package you installed? Can you copy/paste the filename? It seems as if your installation has not worked.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:28 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

Yes, I had tried conda the first, but nothing happened.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:24 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry joe.d.berry@gmail.com wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 < notifications@github.com> wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 < notifications@github.com

wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442

.

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753 .

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169180966

.

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169183969

.

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169186834 .

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169188959 .

— Reply to this email directly or view it on GitHub <https://github.com/ricotabor/opendrop/issues/1#issuecomment-169189587 .

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-169190146.

— Reply to this email directly or view it on GitHub https://github.com/ricotabor/opendrop/issues/1#issuecomment-169190411.

jdber1 commented 8 years ago

Hi Yongman,

You need to install the Anaconda 2.7 distribution as explained in the readme on github. The website is: https://www.continuum.io/downloads. Uninstall your python 2.7 first.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:35 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

It's a windows installer package "python-2.7.11.msi" from the python website.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:30 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Can you tell me exactly which Anaconda package you installed? Can you copy/paste the filename? It seems as if your installation has not worked.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:28 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

Yes, I had tried conda the first, but nothing happened.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:24 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry < joe.d.berry@gmail.com> wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 < notifications@github.com> wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 < notifications@github.com

wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442

.

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753

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— Reply to this email directly or view it on GitHub <

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— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169186834 .

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ymkim2 commented 8 years ago

Hello Joe,

I uninstalled python 2.7 and then installed Anaconda 2.7. After all these, when I tried again, it seems working in the beginning. However, I encountered a blue screen error with "Kernel_Security_Check_Failure" message soon after I ran opendrop. It happened random like sometimes when I selected drop area, sometimes when it calculated, sometimes when I selected an image. Please advise.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:37 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

You need to install the Anaconda 2.7 distribution as explained in the readme on github. The website is: https://www.continuum.io/downloads. Uninstall your python 2.7 first.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:35 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

It's a windows installer package "python-2.7.11.msi" from the python website.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:30 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Can you tell me exactly which Anaconda package you installed? Can you copy/paste the filename? It seems as if your installation has not worked.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:28 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

Yes, I had tried conda the first, but nothing happened.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:24 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 <notifications@github.com

wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry < joe.d.berry@gmail.com> wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 < notifications@github.com> wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 < notifications@github.com

wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442

.

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753

.

— Reply to this email directly or view it on GitHub <

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ymkim2 commented 8 years ago

after I got the blue screen error (Kernel_Security_Check_Failure) several times, now I have the following error from opendrop. I'm not sure what went wrong...

Thanks, Yongman

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:09 PM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I uninstalled python 2.7 and then installed Anaconda 2.7. After all these, when I tried again, it seems working in the beginning. However, I encountered a blue screen error with "Kernel_Security_Check_Failure" message soon after I ran opendrop. It happened random like sometimes when I selected drop area, sometimes when it calculated, sometimes when I selected an image. Please advise.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:37 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

You need to install the Anaconda 2.7 distribution as explained in the readme on github. The website is: https://www.continuum.io/downloads. Uninstall your python 2.7 first.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:35 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

It's a windows installer package "python-2.7.11.msi" from the python website.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:30 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Can you tell me exactly which Anaconda package you installed? Can you copy/paste the filename? It seems as if your installation has not worked.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:28 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

Yes, I had tried conda the first, but nothing happened.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:24 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 <notifications@github.com

wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry < joe.d.berry@gmail.com> wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 < notifications@github.com> wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 < notifications@github.com

wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442

.

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753

.

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169180966

.

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169183969

.

— Reply to this email directly or view it on GitHub <

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.

— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169188959 .

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— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169190411>.

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jdber1 commented 8 years ago

Hi Yongman,

Can you send me your parameters.csv file in the modules subfolder? What values are you using in the GUI for drop properties etc? Does your path to read/write contain any non-standard characters?

Try deleting the parameters.csv file and then try again.

Cheers, Joe

On Fri, Jan 8, 2016 at 9:23 AM, ymkim2 notifications@github.com wrote:

after I got the blue screen error (Kernel_Security_Check_Failure) several times, now I have the following error from opendrop. I'm not sure what went wrong...

Thanks, Yongman

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:09 PM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I uninstalled python 2.7 and then installed Anaconda 2.7. After all these, when I tried again, it seems working in the beginning. However, I encountered a blue screen error with "Kernel_Security_Check_Failure" message soon after I ran opendrop. It happened random like sometimes when I selected drop area, sometimes when it calculated, sometimes when I selected an image. Please advise.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:37 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

You need to install the Anaconda 2.7 distribution as explained in the readme on github. The website is: https://www.continuum.io/downloads. Uninstall your python 2.7 first.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:35 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

It's a windows installer package "python-2.7.11.msi" from the python website.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:30 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Can you tell me exactly which Anaconda package you installed? Can you copy/paste the filename? It seems as if your installation has not worked.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:28 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

Yes, I had tried conda the first, but nothing happened.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:24 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry < joe.d.berry@gmail.com> wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 < notifications@github.com> wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 < notifications@github.com

wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442

.

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753

.

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169180966

.

— Reply to this email directly or view it on GitHub <

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.

— Reply to this email directly or view it on GitHub <

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.

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— Reply to this email directly or view it on GitHub < https://github.com/ricotabor/opendrop/issues/1#issuecomment-169189587 .

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ymkim2 commented 8 years ago

Hello Joe,

Please find the parameters.csv file attached. I changed the needle diameter value (to 1.5875) only, and there is no non-standard characters in the path.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:35 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Can you send me your parameters.csv file in the modules subfolder? What values are you using in the GUI for drop properties etc? Does your path to read/write contain any non-standard characters?

Try deleting the parameters.csv file and then try again.

Cheers, Joe

On Fri, Jan 8, 2016 at 9:23 AM, ymkim2 notifications@github.com wrote:

after I got the blue screen error (Kernel_Security_Check_Failure) several times, now I have the following error from opendrop. I'm not sure what went wrong...

Thanks, Yongman

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:09 PM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I uninstalled python 2.7 and then installed Anaconda 2.7. After all these, when I tried again, it seems working in the beginning. However, I encountered a blue screen error with "Kernel_Security_Check_Failure" message soon after I ran opendrop. It happened random like sometimes when I selected drop area, sometimes when it calculated, sometimes when I selected an image. Please advise.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:37 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

You need to install the Anaconda 2.7 distribution as explained in the readme on github. The website is: https://www.continuum.io/downloads. Uninstall your python 2.7 first.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:35 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

It's a windows installer package "python-2.7.11.msi" from the python website.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:30 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Can you tell me exactly which Anaconda package you installed? Can you copy/paste the filename? It seems as if your installation has not worked.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:28 PM, ymkim2 <notifications@github.com

wrote:

Hello Joe,

Yes, I had tried conda the first, but nothing happened.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:24 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry < joe.d.berry@gmail.com> wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 < notifications@github.com> wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 < notifications@github.com

wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442

.

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753

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— Reply to this email directly or view it on GitHub <

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jdber1 commented 8 years ago

Hi Yongman,

It is not attached - send directly to opendropdev@gmail.com, or copy/paste into email. Did you try deleting the file and running OpenDrop again? It sounds like you have a memory leak somewhere, which we may not be able to help with if it keeps persisting.

Joe

On Fri, Jan 8, 2016 at 9:46 AM, ymkim2 notifications@github.com wrote:

Hello Joe,

Please find the parameters.csv file attached. I changed the needle diameter value (to 1.5875) only, and there is no non-standard characters in the path.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:35 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Can you send me your parameters.csv file in the modules subfolder? What values are you using in the GUI for drop properties etc? Does your path to read/write contain any non-standard characters?

Try deleting the parameters.csv file and then try again.

Cheers, Joe

On Fri, Jan 8, 2016 at 9:23 AM, ymkim2 notifications@github.com wrote:

after I got the blue screen error (Kernel_Security_Check_Failure) several times, now I have the following error from opendrop. I'm not sure what went wrong...

Thanks, Yongman

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:09 PM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I uninstalled python 2.7 and then installed Anaconda 2.7. After all these, when I tried again, it seems working in the beginning. However, I encountered a blue screen error with "Kernel_Security_Check_Failure" message soon after I ran opendrop. It happened random like sometimes when I selected drop area, sometimes when it calculated, sometimes when I selected an image. Please advise.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:37 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

You need to install the Anaconda 2.7 distribution as explained in the readme on github. The website is: https://www.continuum.io/downloads. Uninstall your python 2.7 first.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:35 PM, ymkim2 notifications@github.com wrote:

Hello Joe,

It's a windows installer package "python-2.7.11.msi" from the python website.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:30 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Can you tell me exactly which Anaconda package you installed? Can you copy/paste the filename? It seems as if your installation has not worked.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:28 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

Yes, I had tried conda the first, but nothing happened.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:24 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry < joe.d.berry@gmail.com> wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 < notifications@github.com> wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 < notifications@github.com

wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442

.

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753

.

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169180966

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ymkim2 commented 8 years ago

Please see the file attached. When I opened the file, I could see it doesn't content anything inside.

After deleting the "parameters.csv" file, it seems working now.

Thanks a lot~! Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:50 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

It is not attached - send directly to opendropdev@gmail.com, or copy/paste into email. Did you try deleting the file and running OpenDrop again? It sounds like you have a memory leak somewhere, which we may not be able to help with if it keeps persisting.

Joe

On Fri, Jan 8, 2016 at 9:46 AM, ymkim2 notifications@github.com wrote:

Hello Joe,

Please find the parameters.csv file attached. I changed the needle diameter value (to 1.5875) only, and there is no non-standard characters in the path.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:35 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Can you send me your parameters.csv file in the modules subfolder? What values are you using in the GUI for drop properties etc? Does your path to read/write contain any non-standard characters?

Try deleting the parameters.csv file and then try again.

Cheers, Joe

On Fri, Jan 8, 2016 at 9:23 AM, ymkim2 notifications@github.com wrote:

after I got the blue screen error (Kernel_Security_Check_Failure) several times, now I have the following error from opendrop. I'm not sure what went wrong...

Thanks, Yongman

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:09 PM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I uninstalled python 2.7 and then installed Anaconda 2.7. After all these, when I tried again, it seems working in the beginning. However, I encountered a blue screen error with "Kernel_Security_Check_Failure" message soon after I ran opendrop. It happened random like sometimes when I selected drop area, sometimes when it calculated, sometimes when I selected an image. Please advise.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:37 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

You need to install the Anaconda 2.7 distribution as explained in the readme on github. The website is: https://www.continuum.io/downloads. Uninstall your python 2.7 first.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:35 PM, ymkim2 <notifications@github.com

wrote:

Hello Joe,

It's a windows installer package "python-2.7.11.msi" from the python website.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:30 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Can you tell me exactly which Anaconda package you installed? Can you copy/paste the filename? It seems as if your installation has not worked.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:28 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

Yes, I had tried conda the first, but nothing happened.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:24 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry < joe.d.berry@gmail.com> wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 < notifications@github.com> wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 < notifications@github.com

wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442

.

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753

.

— Reply to this email directly or view it on GitHub <

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jdber1 commented 8 years ago

Good to hear Yongman - good luck using the software.

On Fri, Jan 8, 2016 at 10:07 AM, ymkim2 notifications@github.com wrote:

Please see the file attached. When I opened the file, I could see it doesn't content anything inside.

After deleting the "parameters.csv" file, it seems working now.

Thanks a lot~! Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:50 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

It is not attached - send directly to opendropdev@gmail.com, or copy/paste into email. Did you try deleting the file and running OpenDrop again? It sounds like you have a memory leak somewhere, which we may not be able to help with if it keeps persisting.

Joe

On Fri, Jan 8, 2016 at 9:46 AM, ymkim2 notifications@github.com wrote:

Hello Joe,

Please find the parameters.csv file attached. I changed the needle diameter value (to 1.5875) only, and there is no non-standard characters in the path.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:35 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Can you send me your parameters.csv file in the modules subfolder? What values are you using in the GUI for drop properties etc? Does your path to read/write contain any non-standard characters?

Try deleting the parameters.csv file and then try again.

Cheers, Joe

On Fri, Jan 8, 2016 at 9:23 AM, ymkim2 notifications@github.com wrote:

after I got the blue screen error (Kernel_Security_Check_Failure) several times, now I have the following error from opendrop. I'm not sure what went wrong...

Thanks, Yongman

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:09 PM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I uninstalled python 2.7 and then installed Anaconda 2.7. After all these, when I tried again, it seems working in the beginning. However, I encountered a blue screen error with "Kernel_Security_Check_Failure" message soon after I ran opendrop. It happened random like sometimes when I selected drop area, sometimes when it calculated, sometimes when I selected an image. Please advise.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:37 PM, jdber1 <notifications@github.com

wrote:

Hi Yongman,

You need to install the Anaconda 2.7 distribution as explained in the readme on github. The website is: https://www.continuum.io/downloads. Uninstall your python 2.7 first.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:35 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

It's a windows installer package "python-2.7.11.msi" from the python website.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:30 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Can you tell me exactly which Anaconda package you installed? Can you copy/paste the filename? It seems as if your installation has not worked.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:28 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

Yes, I had tried conda the first, but nothing happened.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:24 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry < joe.d.berry@gmail.com> wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 < notifications@github.com> wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 < notifications@github.com

wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442

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ymkim2 commented 8 years ago

Hello Joe,

I need your help again. I tired to run opendrop-1.1 with the images attached. The program itself looks running okay, but the results are pretty odd. The IFT numbers are all different even the droplet is the same one. And, 3 of the IFT results are far away from reasonable range. If I use the table from Adamson's book (in 1960), the IFT calculation becomes around 30 mN/m, which it looks more reasonable. I checked the manual but I couldn't figure out what might go wrong.

By the way, the first image is a RGB image from a camera, and the others are converted image using imageJ from the original one (32 bit gray, cropped droplet & needle area, and binary with filled). The needle diameter is 1.5875 mm, and the density of droplet is 1010.7 kg/m3. The droplet fluid is 0.1 M NaCl solution saturated with supercritical CO2 at 100 bar 45 C. And its hanging in the supercritical CO2 at the same P (100 bar) & T (45 C).

Please advise.

Thank you, Yongman

[image: Inline image 1]

[image: Inline image 2]

[image: Inline image 3] [image: Inline image 4]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 3:11 PM, jdber1 notifications@github.com wrote:

Good to hear Yongman - good luck using the software.

On Fri, Jan 8, 2016 at 10:07 AM, ymkim2 notifications@github.com wrote:

Please see the file attached. When I opened the file, I could see it doesn't content anything inside.

After deleting the "parameters.csv" file, it seems working now.

Thanks a lot~! Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:50 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

It is not attached - send directly to opendropdev@gmail.com, or copy/paste into email. Did you try deleting the file and running OpenDrop again? It sounds like you have a memory leak somewhere, which we may not be able to help with if it keeps persisting.

Joe

On Fri, Jan 8, 2016 at 9:46 AM, ymkim2 notifications@github.com wrote:

Hello Joe,

Please find the parameters.csv file attached. I changed the needle diameter value (to 1.5875) only, and there is no non-standard characters in the path.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:35 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Can you send me your parameters.csv file in the modules subfolder? What values are you using in the GUI for drop properties etc? Does your path to read/write contain any non-standard characters?

Try deleting the parameters.csv file and then try again.

Cheers, Joe

On Fri, Jan 8, 2016 at 9:23 AM, ymkim2 notifications@github.com wrote:

after I got the blue screen error (Kernel_Security_Check_Failure) several times, now I have the following error from opendrop. I'm not sure what went wrong...

Thanks, Yongman

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:09 PM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I uninstalled python 2.7 and then installed Anaconda 2.7. After all these, when I tried again, it seems working in the beginning. However, I encountered a blue screen error with "Kernel_Security_Check_Failure" message soon after I ran opendrop. It happened random like sometimes when I selected drop area, sometimes when it calculated, sometimes when I selected an image. Please advise.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:37 PM, jdber1 < notifications@github.com

wrote:

Hi Yongman,

You need to install the Anaconda 2.7 distribution as explained in the readme on github. The website is: https://www.continuum.io/downloads. Uninstall your python 2.7 first.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:35 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

It's a windows installer package "python-2.7.11.msi" from the python website.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:30 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Can you tell me exactly which Anaconda package you installed? Can you copy/paste the filename? It seems as if your installation has not worked.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:28 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

Yes, I had tried conda the first, but nothing happened.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:24 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry < joe.d.berry@gmail.com> wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 < notifications@github.com> wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 < notifications@github.com

wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442

.

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753

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ymkim2 commented 8 years ago

Hi Yongman,

I expect that this arises from an anomalously low density difference between the drop and the continuous phase. What value are you using for continuous phase density?

cheers, Rico

Rico Tabor

On 9 January 2016 at 09:09, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I need your help again. I tired to run opendrop-1.1 with the images attached. The program itself looks running okay, but the results are pretty odd. The IFT numbers are all different even the droplet is the same one. And, 3 of the IFT results are far away from reasonable range. If I use the table from Adamson's book (in 1960), the IFT calculation becomes around 30 mN/m, which it looks more reasonable. I checked the manual but I couldn't figure out what might go wrong.

By the way, the first image is a RGB image from a camera, and the others are converted image using imageJ from the original one (32 bit gray, cropped droplet & needle area, and binary with filled). The needle diameter is 1.5875 mm, and the density of droplet is 1010.7 kg/m3. The droplet fluid is 0.1 M NaCl solution saturated with supercritical CO2 at 100 bar 45 C. And its hanging in the supercritical CO2 at the same P (100 bar) & T (45 C).

Please advise.

Thank you, Yongman

[image: Inline image 1]

[image: Inline image 2]

[image: Inline image 3] [image: Inline image 4]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 3:11 PM, jdber1 notifications@github.com wrote:

Good to hear Yongman - good luck using the software.

On Fri, Jan 8, 2016 at 10:07 AM, ymkim2 notifications@github.com wrote:

Please see the file attached. When I opened the file, I could see it doesn't content anything inside.

After deleting the "parameters.csv" file, it seems working now.

Thanks a lot~! Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:50 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

It is not attached - send directly to opendropdev@gmail.com, or copy/paste into email. Did you try deleting the file and running OpenDrop again? It sounds like you have a memory leak somewhere, which we may not be able to help with if it keeps persisting.

Joe

On Fri, Jan 8, 2016 at 9:46 AM, ymkim2 notifications@github.com wrote:

Hello Joe,

Please find the parameters.csv file attached. I changed the needle diameter value (to 1.5875) only, and there is no non-standard characters in the path.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:35 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Can you send me your parameters.csv file in the modules subfolder? What values are you using in the GUI for drop properties etc? Does your path to read/write contain any non-standard characters?

Try deleting the parameters.csv file and then try again.

Cheers, Joe

On Fri, Jan 8, 2016 at 9:23 AM, ymkim2 notifications@github.com wrote:

after I got the blue screen error (Kernel_Security_Check_Failure) several times, now I have the following error from opendrop. I'm not sure what went wrong...

Thanks, Yongman

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:09 PM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I uninstalled python 2.7 and then installed Anaconda 2.7. After all these, when I tried again, it seems working in the beginning. However, I encountered a blue screen error with "Kernel_Security_Check_Failure" message soon after I ran opendrop. It happened random like sometimes when I selected drop area, sometimes when it calculated, sometimes when I selected an image. Please advise.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:37 PM, jdber1 < notifications@github.com

wrote:

Hi Yongman,

You need to install the Anaconda 2.7 distribution as explained in the readme on github. The website is: https://www.continuum.io/downloads. Uninstall your python 2.7 first.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:35 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

It's a windows installer package "python-2.7.11.msi" from the python website.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:30 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Can you tell me exactly which Anaconda package you installed? Can you copy/paste the filename? It seems as if your installation has not worked.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:28 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

Yes, I had tried conda the first, but nothing happened.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:24 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry < joe.d.berry@gmail.com> wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 < notifications@github.com> wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 < notifications@github.com

wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442

.

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169179753

.

— Reply to this email directly or view it on GitHub <

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ymkim2 commented 8 years ago

Hello Rico,

Oops, I didn't enter any number there. However, even after I entered the continuous density of 498.25 kg/m3 (scCO2 density at 100 bar, 45C, from NIST database), the IFT numbers are still far from a reasonable range. Please see the second section in the attached worksheet. And, please let me know what other parameters I may check.

Thank you, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Fri, Jan 8, 2016 at 3:14 PM, Rico Tabor rico.f.tabor@gmail.com wrote:

Hi Yongman,

I expect that this arises from an anomalously low density difference between the drop and the continuous phase. What value are you using for continuous phase density?

cheers, Rico

Rico Tabor

On 9 January 2016 at 09:09, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I need your help again. I tired to run opendrop-1.1 with the images attached. The program itself looks running okay, but the results are pretty odd. The IFT numbers are all different even the droplet is the same one. And, 3 of the IFT results are far away from reasonable range. If I use the table from Adamson's book (in 1960), the IFT calculation becomes around 30 mN/m, which it looks more reasonable. I checked the manual but I couldn't figure out what might go wrong.

By the way, the first image is a RGB image from a camera, and the others are converted image using imageJ from the original one (32 bit gray, cropped droplet & needle area, and binary with filled). The needle diameter is 1.5875 mm, and the density of droplet is 1010.7 kg/m3. The droplet fluid is 0.1 M NaCl solution saturated with supercritical CO2 at 100 bar 45 C. And its hanging in the supercritical CO2 at the same P (100 bar) & T (45 C).

Please advise.

Thank you, Yongman

[image: Inline image 1]

[image: Inline image 2]

[image: Inline image 3] [image: Inline image 4]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 3:11 PM, jdber1 notifications@github.com wrote:

Good to hear Yongman - good luck using the software.

On Fri, Jan 8, 2016 at 10:07 AM, ymkim2 notifications@github.com wrote:

Please see the file attached. When I opened the file, I could see it doesn't content anything inside.

After deleting the "parameters.csv" file, it seems working now.

Thanks a lot~! Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:50 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

It is not attached - send directly to opendropdev@gmail.com, or copy/paste into email. Did you try deleting the file and running OpenDrop again? It sounds like you have a memory leak somewhere, which we may not be able to help with if it keeps persisting.

Joe

On Fri, Jan 8, 2016 at 9:46 AM, ymkim2 notifications@github.com wrote:

Hello Joe,

Please find the parameters.csv file attached. I changed the needle diameter value (to 1.5875) only, and there is no non-standard characters in the path.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:35 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Can you send me your parameters.csv file in the modules subfolder? What values are you using in the GUI for drop properties etc? Does your path to read/write contain any non-standard characters?

Try deleting the parameters.csv file and then try again.

Cheers, Joe

On Fri, Jan 8, 2016 at 9:23 AM, ymkim2 <notifications@github.com

wrote:

after I got the blue screen error (Kernel_Security_Check_Failure) several times, now I have the following error from opendrop. I'm not sure what went wrong...

Thanks, Yongman

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:09 PM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I uninstalled python 2.7 and then installed Anaconda 2.7. After all these, when I tried again, it seems working in the beginning. However, I encountered a blue screen error with "Kernel_Security_Check_Failure" message soon after I ran opendrop. It happened random like sometimes when I selected drop area, sometimes when it calculated, sometimes when I selected an image. Please advise.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:37 PM, jdber1 < notifications@github.com

wrote:

Hi Yongman,

You need to install the Anaconda 2.7 distribution as explained in the readme on github. The website is: https://www.continuum.io/downloads. Uninstall your python 2.7 first.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:35 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

It's a windows installer package "python-2.7.11.msi" from the python website.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:30 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Can you tell me exactly which Anaconda package you installed? Can you copy/paste the filename? It seems as if your installation has not worked.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:28 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

Yes, I had tried conda the first, but nothing happened.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:24 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry < joe.d.berry@gmail.com> wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 < notifications@github.com> wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 < notifications@github.com

wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

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ymkim2 commented 8 years ago

Hi Yongman,

If you are sure about the densities (as I can't check them for you) then I would suggest the next place to look is the way the image is lit. It looks as though the backlight is too strong for the camera, and you are getting significant saturation of pixels around the edge of the drop. This causes the true edge to be lost, making the drop (and possibly also needle) appear smaller than it really is.

I would try to take an image with much lower back-light intensity to see if this helps?

The only other possibility is that the needle diameter is incorrect - these are really the only parameters which you can change! The rest just lies in the physics of the problem.

cheers, Rico

Rico Tabor

On 9 January 2016 at 10:26, Yongman Kim ymkim@lbl.gov wrote:

Hello Rico,

Oops, I didn't enter any number there. However, even after I entered the continuous density of 498.25 kg/m3 (scCO2 density at 100 bar, 45C, from NIST database), the IFT numbers are still far from a reasonable range. Please see the second section in the attached worksheet. And, please let me know what other parameters I may check.

Thank you, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Fri, Jan 8, 2016 at 3:14 PM, Rico Tabor rico.f.tabor@gmail.com wrote:

Hi Yongman,

I expect that this arises from an anomalously low density difference between the drop and the continuous phase. What value are you using for continuous phase density?

cheers, Rico

Rico Tabor

On 9 January 2016 at 09:09, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I need your help again. I tired to run opendrop-1.1 with the images attached. The program itself looks running okay, but the results are pretty odd. The IFT numbers are all different even the droplet is the same one. And, 3 of the IFT results are far away from reasonable range. If I use the table from Adamson's book (in 1960), the IFT calculation becomes around 30 mN/m, which it looks more reasonable. I checked the manual but I couldn't figure out what might go wrong.

By the way, the first image is a RGB image from a camera, and the others are converted image using imageJ from the original one (32 bit gray, cropped droplet & needle area, and binary with filled). The needle diameter is 1.5875 mm, and the density of droplet is 1010.7 kg/m3. The droplet fluid is 0.1 M NaCl solution saturated with supercritical CO2 at 100 bar 45 C. And its hanging in the supercritical CO2 at the same P (100 bar) & T (45 C).

Please advise.

Thank you, Yongman

[image: Inline image 1]

[image: Inline image 2]

[image: Inline image 3] [image: Inline image 4]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 3:11 PM, jdber1 notifications@github.com wrote:

Good to hear Yongman - good luck using the software.

On Fri, Jan 8, 2016 at 10:07 AM, ymkim2 notifications@github.com wrote:

Please see the file attached. When I opened the file, I could see it doesn't content anything inside.

After deleting the "parameters.csv" file, it seems working now.

Thanks a lot~! Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:50 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

It is not attached - send directly to opendropdev@gmail.com, or copy/paste into email. Did you try deleting the file and running OpenDrop again? It sounds like you have a memory leak somewhere, which we may not be able to help with if it keeps persisting.

Joe

On Fri, Jan 8, 2016 at 9:46 AM, ymkim2 notifications@github.com wrote:

Hello Joe,

Please find the parameters.csv file attached. I changed the needle diameter value (to 1.5875) only, and there is no non-standard characters in the path.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:35 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

Can you send me your parameters.csv file in the modules subfolder? What values are you using in the GUI for drop properties etc? Does your path to read/write contain any non-standard characters?

Try deleting the parameters.csv file and then try again.

Cheers, Joe

On Fri, Jan 8, 2016 at 9:23 AM, ymkim2 < notifications@github.com> wrote:

after I got the blue screen error (Kernel_Security_Check_Failure) several times, now I have the following error from opendrop. I'm not sure what went wrong...

Thanks, Yongman

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:09 PM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I uninstalled python 2.7 and then installed Anaconda 2.7. After all these, when I tried again, it seems working in the beginning. However, I encountered a blue screen error with "Kernel_Security_Check_Failure" message soon after I ran opendrop. It happened random like sometimes when I selected drop area, sometimes when it calculated, sometimes when I selected an image. Please advise.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:37 PM, jdber1 < notifications@github.com

wrote:

Hi Yongman,

You need to install the Anaconda 2.7 distribution as explained in the readme on github. The website is: https://www.continuum.io/downloads. Uninstall your python 2.7 first.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:35 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

It's a windows installer package "python-2.7.11.msi" from the python website.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:30 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Can you tell me exactly which Anaconda package you installed? Can you copy/paste the filename? It seems as if your installation has not worked.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:28 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

Yes, I had tried conda the first, but nothing happened.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:24 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry < joe.d.berry@gmail.com> wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 < notifications@github.com> wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 < notifications@github.com

wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

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https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442

.

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ymkim2 commented 8 years ago

Hello Rico,

I'm pretty sure about density values, and the images were taken with the minimum back light. As I mentioned in earlier email, the IFT number calculated from the same image is about 30 mN/m. But, with opendrop, I have about 88-97 mN/m (if I discard image #4, since its Worthing number is 0.33). If I used the same image, I think I should have similar IFT number (regardless of the methods I used). As you mentioned, only a few parameters I enter, and the rest lies in the physics of the problem.

Thank you, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Fri, Jan 8, 2016 at 3:42 PM, Rico Tabor rico.f.tabor@gmail.com wrote:

Hi Yongman,

If you are sure about the densities (as I can't check them for you) then I would suggest the next place to look is the way the image is lit. It looks as though the backlight is too strong for the camera, and you are getting significant saturation of pixels around the edge of the drop. This causes the true edge to be lost, making the drop (and possibly also needle) appear smaller than it really is.

I would try to take an image with much lower back-light intensity to see if this helps?

The only other possibility is that the needle diameter is incorrect - these are really the only parameters which you can change! The rest just lies in the physics of the problem.

cheers, Rico

Rico Tabor

On 9 January 2016 at 10:26, Yongman Kim ymkim@lbl.gov wrote:

Hello Rico,

Oops, I didn't enter any number there. However, even after I entered the continuous density of 498.25 kg/m3 (scCO2 density at 100 bar, 45C, from NIST database), the IFT numbers are still far from a reasonable range. Please see the second section in the attached worksheet. And, please let me know what other parameters I may check.

Thank you, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Fri, Jan 8, 2016 at 3:14 PM, Rico Tabor rico.f.tabor@gmail.com wrote:

Hi Yongman,

I expect that this arises from an anomalously low density difference between the drop and the continuous phase. What value are you using for continuous phase density?

cheers, Rico

Rico Tabor

On 9 January 2016 at 09:09, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I need your help again. I tired to run opendrop-1.1 with the images attached. The program itself looks running okay, but the results are pretty odd. The IFT numbers are all different even the droplet is the same one. And, 3 of the IFT results are far away from reasonable range. If I use the table from Adamson's book (in 1960), the IFT calculation becomes around 30 mN/m, which it looks more reasonable. I checked the manual but I couldn't figure out what might go wrong.

By the way, the first image is a RGB image from a camera, and the others are converted image using imageJ from the original one (32 bit gray, cropped droplet & needle area, and binary with filled). The needle diameter is 1.5875 mm, and the density of droplet is 1010.7 kg/m3. The droplet fluid is 0.1 M NaCl solution saturated with supercritical CO2 at 100 bar 45 C. And its hanging in the supercritical CO2 at the same P (100 bar) & T (45 C).

Please advise.

Thank you, Yongman

[image: Inline image 1]

[image: Inline image 2]

[image: Inline image 3] [image: Inline image 4]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 3:11 PM, jdber1 notifications@github.com wrote:

Good to hear Yongman - good luck using the software.

On Fri, Jan 8, 2016 at 10:07 AM, ymkim2 notifications@github.com wrote:

Please see the file attached. When I opened the file, I could see it doesn't content anything inside.

After deleting the "parameters.csv" file, it seems working now.

Thanks a lot~! Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:50 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

It is not attached - send directly to opendropdev@gmail.com, or copy/paste into email. Did you try deleting the file and running OpenDrop again? It sounds like you have a memory leak somewhere, which we may not be able to help with if it keeps persisting.

Joe

On Fri, Jan 8, 2016 at 9:46 AM, ymkim2 notifications@github.com wrote:

Hello Joe,

Please find the parameters.csv file attached. I changed the needle diameter value (to 1.5875) only, and there is no non-standard characters in the path.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:35 PM, jdber1 <notifications@github.com

wrote:

Hi Yongman,

Can you send me your parameters.csv file in the modules subfolder? What values are you using in the GUI for drop properties etc? Does your path to read/write contain any non-standard characters?

Try deleting the parameters.csv file and then try again.

Cheers, Joe

On Fri, Jan 8, 2016 at 9:23 AM, ymkim2 < notifications@github.com> wrote:

after I got the blue screen error (Kernel_Security_Check_Failure) several times, now I have the following error from opendrop. I'm not sure what went wrong...

Thanks, Yongman

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:09 PM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I uninstalled python 2.7 and then installed Anaconda 2.7. After all these, when I tried again, it seems working in the beginning. However, I encountered a blue screen error with "Kernel_Security_Check_Failure" message soon after I ran opendrop. It happened random like sometimes when I selected drop area, sometimes when it calculated, sometimes when I selected an image. Please advise.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:37 PM, jdber1 < notifications@github.com

wrote:

Hi Yongman,

You need to install the Anaconda 2.7 distribution as explained in the readme on github. The website is: https://www.continuum.io/downloads. Uninstall your python 2.7 first.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:35 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

It's a windows installer package "python-2.7.11.msi" from the python website.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:30 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Can you tell me exactly which Anaconda package you installed? Can you copy/paste the filename? It seems as if your installation has not worked.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:28 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

Yes, I had tried conda the first, but nothing happened.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:24 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry < joe.d.berry@gmail.com> wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 < notifications@github.com> wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 < notifications@github.com

wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub <

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ymkim2 commented 8 years ago

Hi Yongman,

The image is most likely to be the problem. You can see at the bottom of the drop, it appears to 'bulge' aphysically. This is obviously an optical artefact that indicates the image is not suitable for fitting, due to the lighting issue mentioned above (too much backlight or too high contrast setting on camera). If this is the lowest backlight setting, perhaps you could use a neutral density filter to reduce the amount of light getting through? Or change the camera settings (reduce exposure time or stop it autoexposing).

cheers, Rico

Rico Tabor

On 9 January 2016 at 11:18, Yongman Kim ymkim@lbl.gov wrote:

Hello Rico,

I'm pretty sure about density values, and the images were taken with the minimum back light. As I mentioned in earlier email, the IFT number calculated from the same image is about 30 mN/m. But, with opendrop, I have about 88-97 mN/m (if I discard image #4, since its Worthing number is 0.33). If I used the same image, I think I should have similar IFT number (regardless of the methods I used). As you mentioned, only a few parameters I enter, and the rest lies in the physics of the problem.

Thank you, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Fri, Jan 8, 2016 at 3:42 PM, Rico Tabor rico.f.tabor@gmail.com wrote:

Hi Yongman,

If you are sure about the densities (as I can't check them for you) then I would suggest the next place to look is the way the image is lit. It looks as though the backlight is too strong for the camera, and you are getting significant saturation of pixels around the edge of the drop. This causes the true edge to be lost, making the drop (and possibly also needle) appear smaller than it really is.

I would try to take an image with much lower back-light intensity to see if this helps?

The only other possibility is that the needle diameter is incorrect - these are really the only parameters which you can change! The rest just lies in the physics of the problem.

cheers, Rico

Rico Tabor

On 9 January 2016 at 10:26, Yongman Kim ymkim@lbl.gov wrote:

Hello Rico,

Oops, I didn't enter any number there. However, even after I entered the continuous density of 498.25 kg/m3 (scCO2 density at 100 bar, 45C, from NIST database), the IFT numbers are still far from a reasonable range. Please see the second section in the attached worksheet. And, please let me know what other parameters I may check.

Thank you, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Fri, Jan 8, 2016 at 3:14 PM, Rico Tabor rico.f.tabor@gmail.com wrote:

Hi Yongman,

I expect that this arises from an anomalously low density difference between the drop and the continuous phase. What value are you using for continuous phase density?

cheers, Rico

Rico Tabor

On 9 January 2016 at 09:09, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I need your help again. I tired to run opendrop-1.1 with the images attached. The program itself looks running okay, but the results are pretty odd. The IFT numbers are all different even the droplet is the same one. And, 3 of the IFT results are far away from reasonable range. If I use the table from Adamson's book (in 1960), the IFT calculation becomes around 30 mN/m, which it looks more reasonable. I checked the manual but I couldn't figure out what might go wrong.

By the way, the first image is a RGB image from a camera, and the others are converted image using imageJ from the original one (32 bit gray, cropped droplet & needle area, and binary with filled). The needle diameter is 1.5875 mm, and the density of droplet is 1010.7 kg/m3. The droplet fluid is 0.1 M NaCl solution saturated with supercritical CO2 at 100 bar 45 C. And its hanging in the supercritical CO2 at the same P (100 bar) & T (45 C).

Please advise.

Thank you, Yongman

[image: Inline image 1]

[image: Inline image 2]

[image: Inline image 3] [image: Inline image 4]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 3:11 PM, jdber1 notifications@github.com wrote:

Good to hear Yongman - good luck using the software.

On Fri, Jan 8, 2016 at 10:07 AM, ymkim2 notifications@github.com wrote:

Please see the file attached. When I opened the file, I could see it doesn't content anything inside.

After deleting the "parameters.csv" file, it seems working now.

Thanks a lot~! Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:50 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

It is not attached - send directly to opendropdev@gmail.com, or copy/paste into email. Did you try deleting the file and running OpenDrop again? It sounds like you have a memory leak somewhere, which we may not be able to help with if it keeps persisting.

Joe

On Fri, Jan 8, 2016 at 9:46 AM, ymkim2 notifications@github.com wrote:

Hello Joe,

Please find the parameters.csv file attached. I changed the needle diameter value (to 1.5875) only, and there is no non-standard characters in the path.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:35 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Can you send me your parameters.csv file in the modules subfolder? What values are you using in the GUI for drop properties etc? Does your path to read/write contain any non-standard characters?

Try deleting the parameters.csv file and then try again.

Cheers, Joe

On Fri, Jan 8, 2016 at 9:23 AM, ymkim2 < notifications@github.com> wrote:

after I got the blue screen error (Kernel_Security_Check_Failure) several times, now I have the following error from opendrop. I'm not sure what went wrong...

Thanks, Yongman

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:09 PM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I uninstalled python 2.7 and then installed Anaconda 2.7. After all these, when I tried again, it seems working in the beginning. However, I encountered a blue screen error with "Kernel_Security_Check_Failure" message soon after I ran opendrop. It happened random like sometimes when I selected drop area, sometimes when it calculated, sometimes when I selected an image. Please advise.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:37 PM, jdber1 < notifications@github.com

wrote:

Hi Yongman,

You need to install the Anaconda 2.7 distribution as explained in the readme on github. The website is: https://www.continuum.io/downloads. Uninstall your python 2.7 first.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:35 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

It's a windows installer package "python-2.7.11.msi" from the python website.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:30 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Can you tell me exactly which Anaconda package you installed? Can you copy/paste the filename? It seems as if your installation has not worked.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:28 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

Yes, I had tried conda the first, but nothing happened.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:24 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry < joe.d.berry@gmail.com> wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 < notifications@github.com> wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 < notifications@github.com

wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

— Reply to this email directly or view it on GitHub <

https://github.com/ricotabor/opendrop/issues/1#issuecomment-169169442

.

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ymkim2 commented 8 years ago

Hello Rico,

Thank you for the suggestions. I'll try them for getting better images.

Thank you, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Fri, Jan 8, 2016 at 10:45 PM, Rico Tabor rico.f.tabor@gmail.com wrote:

Hi Yongman,

The image is most likely to be the problem. You can see at the bottom of the drop, it appears to 'bulge' aphysically. This is obviously an optical artefact that indicates the image is not suitable for fitting, due to the lighting issue mentioned above (too much backlight or too high contrast setting on camera). If this is the lowest backlight setting, perhaps you could use a neutral density filter to reduce the amount of light getting through? Or change the camera settings (reduce exposure time or stop it autoexposing).

cheers, Rico

Rico Tabor

On 9 January 2016 at 11:18, Yongman Kim ymkim@lbl.gov wrote:

Hello Rico,

I'm pretty sure about density values, and the images were taken with the minimum back light. As I mentioned in earlier email, the IFT number calculated from the same image is about 30 mN/m. But, with opendrop, I have about 88-97 mN/m (if I discard image #4, since its Worthing number is 0.33). If I used the same image, I think I should have similar IFT number (regardless of the methods I used). As you mentioned, only a few parameters I enter, and the rest lies in the physics of the problem.

Thank you, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Fri, Jan 8, 2016 at 3:42 PM, Rico Tabor rico.f.tabor@gmail.com wrote:

Hi Yongman,

If you are sure about the densities (as I can't check them for you) then I would suggest the next place to look is the way the image is lit. It looks as though the backlight is too strong for the camera, and you are getting significant saturation of pixels around the edge of the drop. This causes the true edge to be lost, making the drop (and possibly also needle) appear smaller than it really is.

I would try to take an image with much lower back-light intensity to see if this helps?

The only other possibility is that the needle diameter is incorrect - these are really the only parameters which you can change! The rest just lies in the physics of the problem.

cheers, Rico

Rico Tabor

On 9 January 2016 at 10:26, Yongman Kim ymkim@lbl.gov wrote:

Hello Rico,

Oops, I didn't enter any number there. However, even after I entered the continuous density of 498.25 kg/m3 (scCO2 density at 100 bar, 45C, from NIST database), the IFT numbers are still far from a reasonable range. Please see the second section in the attached worksheet. And, please let me know what other parameters I may check.

Thank you, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Fri, Jan 8, 2016 at 3:14 PM, Rico Tabor rico.f.tabor@gmail.com wrote:

Hi Yongman,

I expect that this arises from an anomalously low density difference between the drop and the continuous phase. What value are you using for continuous phase density?

cheers, Rico

Rico Tabor

On 9 January 2016 at 09:09, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I need your help again. I tired to run opendrop-1.1 with the images attached. The program itself looks running okay, but the results are pretty odd. The IFT numbers are all different even the droplet is the same one. And, 3 of the IFT results are far away from reasonable range. If I use the table from Adamson's book (in 1960), the IFT calculation becomes around 30 mN/m, which it looks more reasonable. I checked the manual but I couldn't figure out what might go wrong.

By the way, the first image is a RGB image from a camera, and the others are converted image using imageJ from the original one (32 bit gray, cropped droplet & needle area, and binary with filled). The needle diameter is 1.5875 mm, and the density of droplet is 1010.7 kg/m3. The droplet fluid is 0.1 M NaCl solution saturated with supercritical CO2 at 100 bar 45 C. And its hanging in the supercritical CO2 at the same P (100 bar) & T (45 C).

Please advise.

Thank you, Yongman

[image: Inline image 1]

[image: Inline image 2]

[image: Inline image 3] [image: Inline image 4]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 3:11 PM, jdber1 notifications@github.com wrote:

Good to hear Yongman - good luck using the software.

On Fri, Jan 8, 2016 at 10:07 AM, ymkim2 notifications@github.com wrote:

Please see the file attached. When I opened the file, I could see it doesn't content anything inside.

After deleting the "parameters.csv" file, it seems working now.

Thanks a lot~! Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:50 PM, jdber1 notifications@github.com wrote:

Hi Yongman,

It is not attached - send directly to opendropdev@gmail.com, or copy/paste into email. Did you try deleting the file and running OpenDrop again? It sounds like you have a memory leak somewhere, which we may not be able to help with if it keeps persisting.

Joe

On Fri, Jan 8, 2016 at 9:46 AM, ymkim2 notifications@github.com wrote:

Hello Joe,

Please find the parameters.csv file attached. I changed the needle diameter value (to 1.5875) only, and there is no non-standard characters in the path.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:35 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Can you send me your parameters.csv file in the modules subfolder? What values are you using in the GUI for drop properties etc? Does your path to read/write contain any non-standard characters?

Try deleting the parameters.csv file and then try again.

Cheers, Joe

On Fri, Jan 8, 2016 at 9:23 AM, ymkim2 < notifications@github.com> wrote:

after I got the blue screen error (Kernel_Security_Check_Failure) several times, now I have the following error from opendrop. I'm not sure what went wrong...

Thanks, Yongman

[image: Inline image 1]

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Thu, Jan 7, 2016 at 2:09 PM, Yongman Kim ymkim@lbl.gov wrote:

Hello Joe,

I uninstalled python 2.7 and then installed Anaconda 2.7. After all these, when I tried again, it seems working in the beginning. However, I encountered a blue screen error with "Kernel_Security_Check_Failure" message soon after I ran opendrop. It happened random like sometimes when I selected drop area, sometimes when it calculated, sometimes when I selected an image. Please advise.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:37 PM, jdber1 < notifications@github.com

wrote:

Hi Yongman,

You need to install the Anaconda 2.7 distribution as explained in the readme on github. The website is: https://www.continuum.io/downloads. Uninstall your python 2.7 first.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:35 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

It's a windows installer package "python-2.7.11.msi" from the python website.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:30 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Can you tell me exactly which Anaconda package you installed? Can you copy/paste the filename? It seems as if your installation has not worked.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:28 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

Yes, I had tried conda the first, but nothing happened.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566

Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:24 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

The command is conda, not anaconda. Try "conda install numpy".

Joe

On Wed, Jan 6, 2016 at 12:21 PM, ymkim2 < notifications@github.com

wrote:

Hello Joe,

nothing happened but "not recognized" error. I tried "anaconda install numpy" and "python install numpy", but only error messages showed.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 5:13 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

A full anaconda installation comes with numpy. However, you can install it from the command line using the command "conda install numpy". Try this and see what happens.

Cheers, Joe

On Wed, Jan 6, 2016 at 12:08 PM, Joe Berry < joe.d.berry@gmail.com> wrote:

Hi Yongman,

Is there a numpy subfolder?

Cheers, Joe

On Wed, Jan 6, 2016 at 12:00 PM, ymkim2 < notifications@github.com> wrote:

Hell Joe,

I have "C:\Python27\Lib\site-packages"

By the way, I searched, and it confirmed that I don't have Python35 nor Anaconda3 folder.

Thanks, Yongman

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 4:49 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

Where is your python installation? Do you have this folder: C:/Python27/lib/site-packages/? Or this folder C:/Anaconda2/Lib/site-packages/? There will be a numpy subfolder within the site-packages folder of your Python 2.7 installation. Can you check for me please? Also, although you have uninstalled Python 3.5, does a Python35 or Anaconda3 folder still exist on your C: drive?

Cheers, Joe

On Wed, Jan 6, 2016 at 11:42 AM, ymkim2 < notifications@github.com

wrote:

I had uninstalled python 3.5 from Windows program setting menu, and it said completely installed followed by rebooting. After then, I installed python 2.7 and again rebooting. I couldn't see any sign of python 3.5, so it seems it had been uninstalled correctly and completely.

I tried to set the full path as the link suggested, but still I have "no module named numpy" error. By the way, when I searched "numpy", there is no folder nor file named numpy. I seemd I have to add numpy.

Yongman Kim, Ph. D. Senior Scientific Engineer Associate Lawrence Berkeley National Laboratory 1 Cyclotron Road, MS 74R316C Berkeley, CA 94720, USA Phone: 510-486-4566 Email: ymkim@lbl.gov

On Tue, Jan 5, 2016 at 3:37 PM, jdber1 < notifications@github.com> wrote:

Hi Yongman,

This usually occurs when you have two existing python versions, see here for example:

http://stackoverflow.com/questions/26318995/installing-numpy-via-anaconda-in-windows

.

Did you uninstall python 3.5 correctly and completely? That seems to be the issue here.

Cheers. Joe

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