pytung
commented
8 years ago Hey Joyce,
I was trying to run cv-adjusted-summary-pois-final.Rmd but encountered a few errors. Do you mind if I work on it a bit?? I am trying to assemble the plots into figures.
Thanks! PoYuan :)
From: Chiaowen Joyce Hsiao [notifications@github.com] Sent: Thursday, March 03, 2016 10:57 PM To: jdblischak/singleCellSeq Subject: [singleCellSeq] upload summary of results, tidy up biological analysis notes (#17)
I git add -f the analysis results (rda in ../data/) need for: cv-adjusted-summary-pois.Rmd cv-adjusted-summary-pois-expressed.Rmd cv-adjusted-summary-pois-dropout.Rmd cv-adjusted-summary-pois-final.Rmd
But note that the permutation results in cv-adjusted-summary-pois.Rmd were done before recent changes in the filter criteria. So let's not build this one until I have the updated results. Thanks!!
Joyce
You can view, comment on, or merge this pull request online at:
https://github.com/jdblischak/singleCellSeq/pull/17
Commit Summary
- update index
- update biological variation analysis
- update results rda
- add summary figures
- add generic cv-mean function
- expressed cells GO results
- update permuted-pval rda name
File Changes
- M analysis/cv-adjusted-summary-pois-dropout.Rmdhttps://github.com/jdblischak/singleCellSeq/pull/17/files#diff-0 (6)
- M analysis/cv-adjusted-summary-pois-expressed.Rmdhttps://github.com/jdblischak/singleCellSeq/pull/17/files#diff-1 (75)
- M analysis/cv-adjusted-summary-pois-final.Rmdhttps://github.com/jdblischak/singleCellSeq/pull/17/files#diff-2 (599)
- M analysis/cv-adjusted-summary-pois.Rmdhttps://github.com/jdblischak/singleCellSeq/pull/17/files#diff-3 (4)
- A analysis/figure/cv-adjusted-summary-pois-expressed.Rmd/go-expressed-sig-wordcloud.pnghttps://github.com/jdblischak/singleCellSeq/pull/17/files#diff-4 (0)
- M analysis/index.Rmdhttps://github.com/jdblischak/singleCellSeq/pull/17/files#diff-5 (2)
- M code/plotting-functions.Rhttps://github.com/jdblischak/singleCellSeq/pull/17/files#diff-6 (92)
- M data/permuted-pval.rdahttps://github.com/jdblischak/singleCellSeq/pull/17/files#diff-7 (0)
Patch Links:
- https://github.com/jdblischak/singleCellSeq/pull/17.patch
- https://github.com/jdblischak/singleCellSeq/pull/17.diff
— Reply to this email directly or view it on GitHubhttps://github.com/jdblischak/singleCellSeq/pull/17.
jhsiao999
I
git add -fthe analysis results (rda in ../data/) need for: cv-adjusted-summary-pois.Rmd cv-adjusted-summary-pois-expressed.Rmd cv-adjusted-summary-pois-dropout.Rmd cv-adjusted-summary-pois-final.RmdBut note that the permutation results in cv-adjusted-summary-pois.Rmd were done before recent changes in the filter criteria. So let's not build this one until I have the updated results. Thanks!!
Joyce