Update biological variation analysis

[pytung]

I was pushing the index.Rmd at the same time. I merged the two different ones already. Should be fine. :)

PoYuan

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From: Chiaowen Joyce Hsiao [notifications@github.com] Sent: Monday, January 25, 2016 11:01 AM To: jdblischak/singleCellSeq Subject: [singleCellSeq] Update biological variation analysis (#7)

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You can view, comment on, or merge this pull request online at:

https://github.com/jdblischak/singleCellSeq/pull/7

Commit Summary

• add DM (normalied CV) reference
• edit gene-symbol html file name
• update the gene query file to the most recent final data set
• gene symbol look-up file
• edit the permutation code to include MAD computations
• edit permutation codes to include MAD computations
• edit cell-to-cell variation methods
• edit variable names

File Changes

• M analysis/gene-symbol.Rmdhttps://github.com/jdblischak/singleCellSeq/pull/7/files#diff-0 (30)
• M analysis/index.Rmdhttps://github.com/jdblischak/singleCellSeq/pull/7/files#diff-1 (2)
• M code/permute-cv-compute-pval.rhttps://github.com/jdblischak/singleCellSeq/pull/7/files#diff-2 (15)
• M code/permute-cv-test-run.rhttps://github.com/jdblischak/singleCellSeq/pull/7/files#diff-3 (7)
• M data/gene-info.txthttps://github.com/jdblischak/singleCellSeq/pull/7/files#diff-4 (1787)
• M paper/methods.Rmdhttps://github.com/jdblischak/singleCellSeq/pull/7/files#diff-5 (27)
• M paper/refs.bibhttps://github.com/jdblischak/singleCellSeq/pull/7/files#diff-6 (10)

Patch Links:

• https://github.com/jdblischak/singleCellSeq/pull/7.patch
• https://github.com/jdblischak/singleCellSeq/pull/7.diff

— Reply to this email directly or view it on GitHubhttps://github.com/jdblischak/singleCellSeq/pull/7.