jdblischak / smk-simple-slurm

A simple Snakemake profile for Slurm without --cluster-config
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Singularity example #2

Closed CreRecombinase closed 3 years ago

CreRecombinase commented 3 years ago

This is is a (relatively) simple example of using singularity with slurm. One thing to note is the addition of the jobscript, where I add the slurm-assigned $TMPDIR to the list of directories mounted in the image. I had some stuff on building a docker image using github actions, but I think that's kind of outside the scope of this repo.

jdblischak commented 3 years ago

Thanks @CreRecombinase!