search

jdblischak / smk-simple-slurm

A simple Snakemake profile for Slurm without --cluster-config
Creative Commons Zero v1.0 Universal
131 stars 16 forks source link

v8 Updates #23

Closed JoshLoecker closed 3 months ago

JoshLoecker commented 4 months ago

Hello! These are the final changes I have made based on our discussion here

The transition was fairly easy, with the exception of one example: slurm-native. Because the --slurm flag is removed in snakemake>8.0.0, and all cluster support should use the --cluster-generic-*-cmd flags, it didn't quite make sense to re-explain the changes introduced in Snakemake 8.0.0, and I feel the default config.v8+.yaml configuration is a good starting point for slurm

If there's any changes or further updates you'd like to see be done, let me know!

jdblischak commented 3 months ago

I deleted the v8 branch. Please submit any potential future PRs to be merged directly into main. Thanks again!