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jdblischak / smk-simple-slurm

A simple Snakemake profile for Slurm without --cluster-config
Creative Commons Zero v1.0 Universal
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add to Snakemake-Profiles project? #4

Closed mufernando closed 2 years ago

mufernando commented 2 years ago

Hi, this is great! Thank you!

Are you thinking about adding this to the Snakemake-Profiles project? It would be great so that this repo is more broadly distributed/easily found.

https://github.com/snakemake-profiles/doc

jdblischak commented 2 years ago

Hi, this is great! Thank you!

@mufernando Thanks for the positive feedback! I'm glad you find it useful.

Are you thinking about adding this to the Snakemake-Profiles project?

I wish I could, but I don't think it would be accepted. My repo doesn't follow the required guidelines. Most notably it isn't installable via cookiecutter. However, it also doesn't follow the typical style of having multiple Python scripts to handle job submission, etc.

And I don't want to change it, since I think this simplicity is its strength. It's easier to customize and quicker to execute.

It would be great so that this repo is more broadly distributed/easily found.

I'm interested in distributing this as widely as possible. Please share with your colleagues, and let me know if there are other avenues for letting Snakemake users know about this profile. Thanks!

jdblischak commented 2 years ago

The maintainer of the official Slurm profile has graciously added a new section to the REAMDE that mentions smk-simple-slurm. Now any Snakemake user investigating how to execute their pipeline on Slurm will be notified that this alternative exists.

https://github.com/Snakemake-Profiles/slurm#alternatives https://github.com/Snakemake-Profiles/slurm/pull/84

boulund commented 1 year ago

I'm so glad this profile alternative is mentioned in the officially sanctioned Snakemake Slurm profile README.

@jdblischak I think this simple slurm profile is excellent! Short, straight to the point, exceptionally well documented with all the examples. Just the way I like it! Thank you!

jdblischak commented 1 year ago

@boulund Thanks so much for the positive feedback!