PlotCHETA redD option not working

jdekanter / CHETAH

scRNA-seq cell type identification

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PlotCHETA redD option not working #12

Closed ericpanyc closed 2 years ago

ericpanyc commented 4 years ago

Hello,

I'm using UMAP as non-linear dimensional reduction method. `reducedDimNames(input_VS4)

[1] "UMAP"`

However, when I PlotCHETA with redD = "UMAP", the plot still shows the x and y axis as tSNE.

jdekanter commented 4 years ago

Hi Eric,

Thanks for using CHETAH. Thanks for your input and sorry for the inconvenience. I see that I've never made the x and y axis labels adjust to the name of the dimensional reduction. So, the plot actually shows the UMAP dimensions, but the labels are not correct. I will work on this and hopefully upload an new version of the packages with some additional fixes at the end of the week.

Best, Jurrian

jdekanter commented 2 years ago

This has been adjusted in Bioconductor version 1.12.1.