search

jdidion / atropos

An NGS read trimming tool that is specific, sensitive, and speedy. (production)
Other
119 stars 15 forks source link

sequencing_adapters.fa : 404 not found #111

Closed plijnzaad closed 3 years ago

plijnzaad commented 3 years ago

When running atropos I always get the message that sequencing_adapters.fa cannot be found, leading to way too many warnings in my logs. Can this adapter file be made available as part of the distribution (not downloaded on the fly), or the messages be suppressed or be made less verbose? Using --log-level WARNING it still generates 140 lines of logging output. (this is version 2.0.0a5.post20200601)

jdidion commented 3 years ago

This was due to switching the master branch to main. This issue is fixed, but I will open a separate enhancement issue to package the file rather than fetch it from GitHub.