The problem occurs with large files using the multithreading option (-T/--threads): atropos never finish the main process.
Sometimes the error message "ERROR: Waiting on Result process to terminate for 60.1 seconds" appears in the output tail, suggesting that the program was stuck while waiting for a subprocess or worker thread to finish.
I'm using Python 3.12.4 and the fastq file has 15,462,290 reads. The same doesn't occurr with files up to 1,000,000 reads.
The problem occurs with large files using the multithreading option (-T/--threads): atropos never finish the main process.
Sometimes the error message "ERROR: Waiting on Result process to terminate for 60.1 seconds" appears in the output tail, suggesting that the program was stuck while waiting for a subprocess or worker thread to finish.
I'm using Python 3.12.4 and the fastq file has 15,462,290 reads. The same doesn't occurr with files up to 1,000,000 reads.