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jdidion / atropos

An NGS read trimming tool that is specific, sensitive, and speedy. (production)
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Error when using --sra with json output #34

Closed jdidion closed 7 years ago

jdidion commented 7 years ago

The JSON serializer chokes when serializing the sra_reader. The sra_reader that is set in the option dict is intended to be transient. It just needs to be nulled out after use.