Everything is identical but the third column (expect) that is 6 times the values reported in cutadapt.
Not sure what is the reason for this difference, and whether is a bug or intended behaviour.
I think I've figured this out, but I'd like to test it on some real-world data to make sure. Can you provide a sample fastq and the atropos command you used? A subset of ~10000 reads should be enough. Thanks
Here is a sample of a cutadapt report for a given adapter:
and atropos 1.1.14 reports:
Everything is identical but the third column (expect) that is 6 times the values reported in cutadapt. Not sure what is the reason for this difference, and whether is a bug or intended behaviour.