I am aware that atropos can output reports in json, which is more robust but currently I am still parsing the report in txt format and noticed this discrepancy in the single end case as compared to the cutadapt report. This is just a typo in the label. Note the correct "s" in "Reads with adapters"
=== Summary ===
Total reads processed: 2,500
Reads with adapters: 0 (0.0%)
Reads that were too short: 18 (0.7%)
Reads written (passing filters): 2,482 (99.3%)
whereas in atopos 1.1.5 there is no "s" at "adapter"
Reads records fraction
----------------------------------- ---------- ----------
Total reads processed: 78,316
Reads with adapter: 330 0.4%
Reads that were too short: 285 0.4%
I am aware that atropos can output reports in json, which is more robust but currently I am still parsing the report in txt format and noticed this discrepancy in the single end case as compared to the cutadapt report. This is just a typo in the label. Note the correct "s" in "Reads with adapters"
whereas in atopos 1.1.5 there is no "s" at "adapter"