option to support -a "ADAPTER;max_error_rate=0.2;min_overlap=5"

jdidion / atropos

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

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option to support -a "ADAPTER;max_error_rate=0.2;min_overlap=5" #75

Open MarinusVL opened 6 years ago

MarinusVL commented 6 years ago

Hi it would be great if the cutadapt option to specify error rate and min_overlap for individual adapters could be implemented. currently this doesn't work. e.g. -a "ADAPTER;max_error_rate=0.2;min_overlap=5"

ValueError: Invalid character(s) in adapter sequence:0

Thanks, Marinus