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jdrudolph / photon

PHOsphoproteomic dissecTiOn using Networks
GNU General Public License v3.0
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Two of three sidedness options producing errors #19

Closed jonhsussman closed 5 years ago

jonhsussman commented 6 years ago

The default, greater sidedness option works without producing an error, however the lesser sidedness option and two-sided options each produce a different error. The lesser sided option produces the following error: no significant signaling functionality scores found, possibly due to insufficient data. The two sided option produces the following error: side parameters has to be one of "greater", "twosided", "less", was two-sided.

Is this a glitch or can you suggest a possible solution for this problem?

Thanks, Jonathan

jdrudolph commented 6 years ago

I was unable to reproduce the errors you describe with the latest development version of PluginPHOTON on my computer.

The "no significant signaling functionality scores found, possibly due to insufficient data." can be expected in some cases.

Could you try again after replacing the dlls in the Perseus\bin folder? https://drive.google.com/file/d/1i0Bs3zOe9LMbL9L52qA_1QzfFFzwxFa6/view?usp=sharing

jonhsussman commented 6 years ago

Thanks for the information.

The errors occurred while running it through Docker based on the instruction in the README.md file.

I will try running PluginPHOTON through Perseus and see if that resolves the error.