Closed jdrusso closed 1 year ago
Merging #34 (24c3adc) into main (01855ca) will increase coverage by
2.37%
. The diff coverage is54.12%
.
@@ Coverage Diff @@
## main #34 +/- ##
==========================================
+ Coverage 51.22% 53.60% +2.37%
==========================================
Files 23 25 +2
Lines 3715 3871 +156
==========================================
+ Hits 1903 2075 +172
+ Misses 1812 1796 -16
Impacted Files | Coverage Δ | |
---|---|---|
msm_we/msm_we.py | 42.26% <3.84%> (+2.43%) |
:arrow_up: |
msm_we/_hamsm/_dimensionality.py | 41.86% <21.05%> (-2.21%) |
:arrow_down: |
msm_we/_hamsm/_fluxmatrix.py | 18.21% <33.33%> (+0.23%) |
:arrow_up: |
msm_we/optimization.py | 36.84% <75.00%> (ø) |
|
msm_we/_hamsm/_clustering.py | 53.37% <76.19%> (+5.40%) |
:arrow_up: |
msm_we/_hamsm/_data.py | 44.57% <100.00%> (+5.08%) |
:arrow_up: |
tests/conftest.py | 100.00% <100.00%> (ø) |
|
tests/fixtures/hamsms.py | 96.36% <100.00%> (+1.46%) |
:arrow_up: |
tests/test_optimization.py | 100.00% <100.00%> (ø) |
|
... and 6 more |
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Yuck, I messed up history a little somewhere... I wanted to rebase this, but I'm just going to squash it.
New features
haMSM building
tqdm
torich
. In addition to looking better, these should spam logfile output lessPlugins
The haMSM plugin now exposes:
ray_kwargs
parameter, which is a dictionary of arbitrary arguments to pass toray.init()
ray_address
parameter, which is an address of a Ray cluster that can be passed toray.init()
(See https://docs.ray.io/en/latest/ray-core/package-ref.html#ray.init)Other
Bugfixes
deeptime
is now properly specified as a requirement