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jdwinkler / resistome_generator

Development repo for the Resistome database and its tooling.
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Add seqfold for RNA/DNA stability predictions #18

Open jdwinkler opened 3 years ago

jdwinkler commented 3 years ago

See here: https://pypi.org/project/seqfold/

This is a substitute for ViennaRNA etc, but may not be quite as good. However, far more convenient.

jdwinkler commented 3 years ago

Note: by add I just mean add to the requirements at least, It might be possible to generate folding predictions around the genome/mRNA from the annotations.

jdwinkler commented 3 years ago

Also of interest:

https://pypi.org/project/osTIR/ for predicting translation initiation rates.