Open gamorosino opened 2 years ago
Hi all, I have successfully installed geomloss. However, when I run the script, the following Bug results. Any idea about it? thank you
command
python transfer_labels.py
log:
Fetching the atlas... Done. Fetching the atlas... Done. Fetching the atlas... Done. Data loaded. [pyKeOps] Compiling libKeOpstorch5fbe6e35e9 in /home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0: formula: ArgMin_Reduction(Sum(Square((Var(0,60,0) - Var(1,60,1)))),0) aliases: Var(0,60,0); Var(1,60,1); dtype : float32 ... /home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/cmake_scripts/script_keops_formula/../../keops/core/formulas/maths/TensorDot.h:201:267: error: expansion pattern ‘tao::seq::map_t<typename tao::seq::difference<typename tao::seq::impl::memoize_sequence<long unsigned int, tao::seq::impl::sequence_size<I>::value>::type, CONTFA>::type, DIMFA>’ contains no argument packs /home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/cmake_scripts/script_keops_formula/../../keops/core/formulas/maths/TensorDot.h:201:410: error: expansion pattern ‘tao::seq::map_t<typename tao::seq::difference<typename tao::seq::impl::memoize_sequence<long unsigned int, tao::seq::impl::sequence_size<DIMFB>::value>::type, CONTFB>::type, DIMFB>’ contains no argument packs compilation terminated due to -fmax-errors=2. make[3]: *** [CMakeFiles/copy_KeOps_formula.dir/home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/keops/core/link_autodiff.cu.o] Error 1 make[2]: *** [CMakeFiles/copy_KeOps_formula.dir/all] Error 2 make[1]: *** [CMakeFiles/KeOps_formula.dir/rule] Error 2 make: *** [KeOps_formula] Error 2 --------------------- MAKE DEBUG ----------------- Command '['cmake', '--build', '.', '--target', 'KeOps_formula', '--', 'VERBOSE=1']' returned non-zero exit status 2. /usr/bin/cmake -S/home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/cmake_scripts/script_keops_formula -B/home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0/build-7e6973de82 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 KeOps_formula make[1]: Entering directory '/home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0/build-7e6973de82' /usr/bin/cmake -S/home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/cmake_scripts/script_keops_formula -B/home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0/build-7e6973de82 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0/build-7e6973de82/CMakeFiles 1 /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/KeOps_formula.dir/all make[2]: Entering directory '/home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0/build-7e6973de82' /usr/bin/make -f CMakeFiles/copy_KeOps_formula.dir/build.make CMakeFiles/copy_KeOps_formula.dir/depend make[3]: Entering directory '/home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0/build-7e6973de82' cd /home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0/build-7e6973de82 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/cmake_scripts/script_keops_formula /home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/cmake_scripts/script_keops_formula /home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0/build-7e6973de82 /home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0/build-7e6973de82 /home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0/build-7e6973de82/CMakeFiles/copy_KeOps_formula.dir/DependInfo.cmake --color= make[3]: Leaving directory '/home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0/build-7e6973de82' /usr/bin/make -f CMakeFiles/copy_KeOps_formula.dir/build.make CMakeFiles/copy_KeOps_formula.dir/build make[3]: Entering directory '/home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0/build-7e6973de82' [100%] Building CUDA object CMakeFiles/copy_KeOps_formula.dir/home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/keops/core/link_autodiff.cu.o /usr/local/cuda/bin/nvcc -ccbin=/usr/bin/c++ -DCUDA_BLOCK_SIZE=192 -DC_CONTIGUOUS=1 -DMAXIDGPU=0 -DMAXTHREADSPERBLOCK0=1024 -DSHAREDMEMPERBLOCK0=49152 -DUSE_CUDA=1 -DUSE_DOUBLE=0 -DUSE_HALF=0 -D_FORCE_INLINES -D_GLIBCXX_USE_CXX11_ABI=0 -D__TYPE__=float -I/home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/cmake_scripts/script_keops_formula/../.. -I/home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0/build-7e6973de82 -I/home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/cmake_scripts/script_keops_formula/../../keops -I/usr/local/cuda/targets/x86_64-linux/include -gencode arch=compute_61,code=sm_61 --use_fast_math --compiler-options=-fPIC -DUSE_OPENMP -Xcompiler -fopenmp,-Wall,-Wno-unknown-pragmas,-fmax-errors=2 -O3 -DNDEBUG -Xcompiler=-fPIC -include KeOps_formula.h -std=c++14 -x cu -c /home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/keops/core/link_autodiff.cu -o CMakeFiles/copy_KeOps_formula.dir/home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/keops/core/link_autodiff.cu.o CMakeFiles/copy_KeOps_formula.dir/build.make:76: recipe for target 'CMakeFiles/copy_KeOps_formula.dir/home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/keops/core/link_autodiff.cu.o' failed make[3]: Leaving directory '/home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0/build-7e6973de82' CMakeFiles/Makefile2:109: recipe for target 'CMakeFiles/copy_KeOps_formula.dir/all' failed make[2]: Leaving directory '/home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0/build-7e6973de82' CMakeFiles/Makefile2:90: recipe for target 'CMakeFiles/KeOps_formula.dir/rule' failed make[1]: Leaving directory '/home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0/build-7e6973de82' Makefile:124: recipe for target 'KeOps_formula' failed --------------------- ----------- ----------------- [pyKeOps] Compiling pybind11 template libKeOps_template_354d16605e in /home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0 ... Traceback (most recent call last): File "transfer_labels.py", line 253, in <module> C_i_flat, labs_i = KMeans(X_i_flat, C_i_flat) File "transfer_labels.py", line 223, in KMeans labs_i = nn_search(x_i, c_j, ranges=ranges) File "transfer_labels.py", line 210, in nn_search return D_ij.argmin(dim=1).view(-1) File "/home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/common/lazy_tensor.py", line 1929, in argmin return self.reduction("ArgMin", axis=axis, **kwargs) File "/home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/common/lazy_tensor.py", line 744, in reduction return res() File "/home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/common/lazy_tensor.py", line 929, in __call__ return self.callfun(*args, *self.variables, **self.kwargs) File "/home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/torch/generic/generic_red.py", line 579, in __call__ *args File "/home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/torch/generic/generic_red.py", line 48, in forward formula, aliases, dtype, "torch", optional_flags, include_dirs File "/home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/common/keops_io.py", line 48, in __init__ self._safe_compile() File "/home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/common/utils.py", line 75, in wrapper_filelock func_res = func(*args, **kwargs) File "/home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/common/keops_io.py", line 63, in _safe_compile self.build_folder, File "/home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/common/compile_routines.py", line 246, in compile_generic_routine dtype, lang, include_dirs, use_prebuilt_formula=True File "/home/gamorosino/miniconda3/lib/python3.7/site-packages/pykeops/common/compile_routines.py", line 67, in get_or_build_pybind11_template os.mkdir(template_build_folder) FileExistsError: [Errno 17] File exists: '/home/gamorosino/.cache/pykeops-1.5-cpython-37-gpu0//build-pybind11_template-libKeOps_template_354d16605e'
Hi all, I have successfully installed geomloss. However, when I run the script, the following Bug results. Any idea about it? thank you
command
python transfer_labels.pylog: