jeanollion
commented
4 years ago Hello @JBroughton80 , Thanks for your encouragements. With this import mode, bacmman split all you files by position name then channel index then frame.
So it seems there is at least 2 files that have the same detected position name & channel index & frame. I will try to take the time to write a more human-readable error message !!
Position name / channel index / frame are identified according to the keywords you configure (cf hint of the import method), so check the import settings and make sure they are set so that position name / channel index and frame are uniquely and well identified. For instance for this file : IMG-20191222_MMC_Gly_206_302_XY-XY20_302_CHN-mCherry_IT-0001.tif , supposing the position number is the 20 located after the XY do not use XY as position identifier as it is not unique in the name but XY-XY or even maybe _IMG-20191222_MMC_Gly_206_302XY-XY if it is shared by all the files of your dataset and for instance you can use _IT- as frame identifier. I'll update the hint of the method to make it clearer.
Also check your dataset for duplicate files (in terms of position name / channel index and frame) , start with the file IMG-20191222_MMC_Gly_206_302_XY-XY20_302_CHN-mCherry_IT-0001.tif
Some bug fixes have been made but nothing to do with image import, I will update them in FIJI shortly. Good luck, Jean
j-broughton
Hi,
I'll start by saying that this software is great and a pleasure to use compared to others I have tried.
When loading some datasets I get the error below, and I am having a hard time troubleshooting this. I have no experience with java by the way. Looking this up online this error appears to have been fixed in later versions of java, but I am not sure how to implement different versions with Fiji.
I suspect that there are too many files being imported? Because I can separate the data set into different folders and load those just fine.
Also, will the recent changes you have been making be added when I update through fiji?
Thanks in advance.