Some examples in `/docs/source/examples` are broken - Githubissues

jeetsukumaran / DendroPy

A Python library for phylogenetic scripting, simulation, data processing and manipulation.

https://pypi.org/project/DendroPy/.

BSD 3-Clause "New" or "Revised" License

205 stars 63 forks source link

Some examples in `/docs/source/examples` are broken #160

Open mmore500 opened 1 year ago

mmore500 commented 1 year ago

Known broken examples to fix or remove:

[ ] bdtree_multi1.py
[ ] bdtree_multi2.py
[ ] bibtex_annotations1.py
[ ] bibtex_annotations2.py
[ ] bibtex_annotations3.py
[ ] ds2.py
[ ] paup_estimate_model.py
[ ] paup_estimate_tree_ml.py
[ ] pdm_tns1.py
[ ] preorder_filtered_edge_iteration.py
[ ] raxml_estimate_tree.py
[ ] seqgen.py
[ ] taxa_mgmt1a.py
[ ] tree_list_add1.py