Import GTF in lieu of a UCSC genome

jeffbhasin / goldmine

Annotate genomic contexts and discover functional element enrichments

http://jeffbhasin.github.io/goldmine

MIT License

7 stars 5 forks source link

Import GTF in lieu of a UCSC genome #2

Open jeffbhasin opened 7 years ago

jeffbhasin commented 7 years ago

UCSC's database does not include any plant genomes. Thus, Goldmine currently does not support annotation of plant genomics data. Could a GTF parser be included that enables using genes from a non-UCSC genome? In particular, plant genomes from http://plants.ensembl.org/?