setup.py install fails on MacOSX

[philres]

Hi again,

Thanks for the quick fix! 1.1.10 works now for me on Ubuntu but unfortunately still breaks on macOS Sierra 10.12.6 with the error below if automake, libtool and autoconf are not installed.

For me this is not a problem at the moment as brew install automake libtool autoconf fixes it. Just wanted to let you know that on a standard Mac parasail won't install at the moment. Unfortunately, I'm a bit busy right now, but later this week I'm happy to take a look at it myself and see wether I can fix it, in case you don't have time for it.

Thanks, Philipp

(cuecat) prescheneder@preschen-mac ~/Development/PycharmProjects/cuecat $ pip install parasail
Collecting parasail
  Using cached parasail-1.1.10.tar.gz
Requirement already satisfied: numpy in /Users/prescheneder/miniconda2/envs/cuecat/lib/python2.7/site-packages (from parasail)
Building wheels for collected packages: parasail
  Running setup.py bdist_wheel for parasail ... error
  Complete output from command /Users/prescheneder/miniconda2/envs/cuecat/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/tmpFutrVOpip-wheel- --python-tag cp27:
  running bdist_wheel
  parasail/libparasail.dylib not found, attempting to build
  Downloading latest parasail master
  Unzipping parasail master archive
  fixing executable bits after unzipping
  Unable to find parasail configure script
  Running autoreconf -fi from ./parasail-master
  GNU M4 1.4.6
  autoconf not found
  automake not found
  error: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/libtool: unknown option character `-' in: --version
  Usage: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/libtool -static [-] file [...] [-filelist listfile[,dirname]] [-arch_only arch] [-sacLT] [-no_warning_for_no_symbols]
  Usage: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/libtool -dynamic [-] file [...] [-filelist listfile[,dirname]] [-arch_only arch] [-o output] [-install_name name] [-compatibility_version #] [-current_version #] [-seg1addr 0x#] [-segs_read_only_addr 0x#] [-segs_read_write_addr 0x#] [-seg_addr_table <filename>] [-seg_addr_table_filename <file_system_path>] [-all_load] [-noall_load]
  CalledProcessError()
  autoreconf not found
  Prepending /private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/autotools/bin to PATH
  PATH=/private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/autotools/bin:/Users/prescheneder/miniconda2/envs/cuecat/bin:/Users/prescheneder/miniconda2/bin/:/usr/local/bin:/usr/local/sbin:/Users/prescheneder/Development/PycharmProjects/phtools/tools/:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Library/TeX/texbin:/Users/prescheneder/Development/PycharmProjects/phworkspace/tools/
  Building autotools
  Downloading http://ftp.gnu.org/gnu/m4/m4-1.4.17.tar.gz
  Expanding m4-1.4.17.tar.gz
  configuring m4
  making and installing m4
  Downloading http://ftp.gnu.org/gnu/autoconf/autoconf-2.69.tar.gz
  Expanding autoconf-2.69.tar.gz
  configuring autoconf
  making and installing autoconf
  Downloading http://ftp.gnu.org/gnu/automake/automake-1.13.4.tar.gz
  Expanding automake-1.13.4.tar.gz
  configuring automake
  making and installing automake
    GEN      automake
    GEN      aclocal
    GEN      t/ax/shell-no-trail-bslash
    GEN      runtest
    GEN      doc/aclocal.1
    GEN      doc/automake.1
    GEN      lib/Automake/Config.pm
    GEN      t/ax/test-defs.sh
    GEN      doc/aclocal-1.13.1
    GEN      doc/automake-1.13.1
  help2man: can't get `--help' info from automake-1.13
  Try `--no-discard-stderr' if option outputs to stderr
  make: *** [doc/automake-1.13.1] Error 255
  make: *** Waiting for unfinished jobs....

  Traceback (most recent call last):
    File "<string>", line 1, in <module>
    File "/private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/setup.py", line 443, in <module>
      install_requires=INSTALL_REQUIRES,
    File "/Users/prescheneder/miniconda2/envs/cuecat/lib/python2.7/site-packages/setuptools/__init__.py", line 129, in setup
      return distutils.core.setup(**attrs)
    File "/Users/prescheneder/miniconda2/envs/cuecat/lib/python2.7/distutils/core.py", line 151, in setup
      dist.run_commands()
    File "/Users/prescheneder/miniconda2/envs/cuecat/lib/python2.7/distutils/dist.py", line 953, in run_commands
      self.run_command(cmd)
    File "/Users/prescheneder/miniconda2/envs/cuecat/lib/python2.7/distutils/dist.py", line 972, in run_command
      cmd_obj.run()
    File "/private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/setup.py", line 405, in run
      prepare_shared_lib()
    File "/private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/setup.py", line 399, in prepare_shared_lib
      build_parasail(libname)
    File "/private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/setup.py", line 286, in build_parasail
      build_autotools()
    File "/private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/setup.py", line 235, in build_autotools
      raise RuntimeError("make of {} failed".format(tool))
  RuntimeError: make of automake failed

  ----------------------------------------
  Failed building wheel for parasail
  Running setup.py clean for parasail
Failed to build parasail
Installing collected packages: parasail
  Running setup.py install for parasail ... error
    Complete output from command /Users/prescheneder/miniconda2/envs/cuecat/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-ZdslqC-record/install-record.txt --single-version-externally-managed --compile:
    running install
    parasail/libparasail.dylib not found, attempting to build
    Archive 'parasail-master.zip' already downloaded
    Archive 'parasail-master.zip' already unzipped to /private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail
    parasail archive executable permissions ok
    Unable to find parasail configure script
    Running autoreconf -fi from ./parasail-master
    GNU M4 1.4.6
    autoconf not found
    automake not found
    error: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/libtool: unknown option character `-' in: --version
    Usage: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/libtool -static [-] file [...] [-filelist listfile[,dirname]] [-arch_only arch] [-sacLT] [-no_warning_for_no_symbols]
    Usage: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/libtool -dynamic [-] file [...] [-filelist listfile[,dirname]] [-arch_only arch] [-o output] [-install_name name] [-compatibility_version #] [-current_version #] [-seg1addr 0x#] [-segs_read_only_addr 0x#] [-segs_read_write_addr 0x#] [-seg_addr_table <filename>] [-seg_addr_table_filename <file_system_path>] [-all_load] [-noall_load]
    CalledProcessError()
    autoreconf not found
    Prepending /private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/autotools/bin to PATH
    PATH=/private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/autotools/bin:/Users/prescheneder/miniconda2/envs/cuecat/bin:/Users/prescheneder/miniconda2/bin/:/usr/local/bin:/usr/local/sbin:/Users/prescheneder/Development/PycharmProjects/phtools/tools/:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Library/TeX/texbin:/Users/prescheneder/Development/PycharmProjects/phworkspace/tools/
    Building autotools
    m4-1.4.17.tar.gz already exists! Using existing copy.
    m4-1.4.17 already exists! Using existing sources.
    /private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/autotools/bin/m4 already exists! Skipping build.
    autoconf-2.69.tar.gz already exists! Using existing copy.
    autoconf-2.69 already exists! Using existing sources.
    /private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/autotools/bin/autoconf already exists! Skipping build.
    automake-1.13.4.tar.gz already exists! Using existing copy.
    automake-1.13.4 already exists! Using existing sources.
    configuring automake
    making and installing automake
      GEN      aclocal
      GEN      t/ax/shell-no-trail-bslash
      GEN      automake
      GEN      runtest
      GEN      lib/Automake/Config.pm
      GEN      t/ax/test-defs.sh
      GEN      doc/aclocal-1.13.1
      GEN      doc/automake-1.13.1
    help2man: can't get `--help' info from automake-1.13
    Try `--no-discard-stderr' if option outputs to stderr
    make: *** [doc/automake-1.13.1] Error 255
    make: *** Waiting for unfinished jobs....

    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/setup.py", line 443, in <module>
        install_requires=INSTALL_REQUIRES,
      File "/Users/prescheneder/miniconda2/envs/cuecat/lib/python2.7/site-packages/setuptools/__init__.py", line 129, in setup
        return distutils.core.setup(**attrs)
      File "/Users/prescheneder/miniconda2/envs/cuecat/lib/python2.7/distutils/core.py", line 151, in setup
        dist.run_commands()
      File "/Users/prescheneder/miniconda2/envs/cuecat/lib/python2.7/distutils/dist.py", line 953, in run_commands
        self.run_command(cmd)
      File "/Users/prescheneder/miniconda2/envs/cuecat/lib/python2.7/distutils/dist.py", line 972, in run_command
        cmd_obj.run()
      File "/private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/setup.py", line 416, in run
        prepare_shared_lib()
      File "/private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/setup.py", line 399, in prepare_shared_lib
        build_parasail(libname)
      File "/private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/setup.py", line 286, in build_parasail
        build_autotools()
      File "/private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/setup.py", line 235, in build_autotools
        raise RuntimeError("make of {} failed".format(tool))
    RuntimeError: make of automake failed

    ----------------------------------------
Command "/Users/prescheneder/miniconda2/envs/cuecat/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-ZdslqC-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/hx/q0ng7k3n2116hc4k2xhf_zyh3pw2nw/T/pip-build-2tRBtl/parasail/

[jeffdaily]

Thank you for the bug report. This was of course the one combination I failed to test before pushing the setup.py changes. I use homebrew and had the autotools already installed and that was the problem - homebrew perl was not built for threading. The system's /usr/bin/perl works just fine, so I modified setup.py to prepend /usr/bin to the PATH.

[philres]

Well that was quick. Thanks!

On Wed, 17 Jan 2018, 19:27 Jeff Daily, notifications@github.com wrote:

Closed #20 https://github.com/jeffdaily/parasail-python/issues/20 via e3e823b https://github.com/jeffdaily/parasail-python/commit/e3e823b1c352ee0e745601153024db1f01505bbe .

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/jeffdaily/parasail-python/issues/20#event-1428979356, or mute the thread https://github.com/notifications/unsubscribe-auth/ACN2HC9nEgIDTQkzktyET3qr-bBmmo6Oks5tLkjlgaJpZM4RhKVE .