Running test suite in travis.

[iiSeymour]

The test suite needs some work to get up and running again: rough plan -

• [X] Make Python 2 and 3 compatible (remove use of print statements & pytest).
• [X] Use a test framework and test runner (unittest in the stlib will do the job).
• [X] Skip the failing test initially.
• [X] Set CIBW_TEST_COMMAND to run the test suite against all the wheels on every commit.
• [ ] Fix the failing tests.
• [ ] Add more tests.

[iiSeymour]

@jeffdaily the full test suite is now exercised against all the builds on every commit - see https://travis-ci.org/iiSeymour/parasail-python/

Only one test fails (test_ssw.py) but I have marked it as expected to fail for know.

Done. Your build exited with 0.
.............x.
attempted to set value of built-in matrix 'blosum62'
.Exception ignored in: <function Profile.__del__ at 0x00000219096AAEE8>
Traceback (most recent call last):
  File "C:\Users\travis\AppData\Local\Temp\tmpm67wfjdv\lib\site-packages\parasail\bindings_v2.py", line 547, in __del__
    _lib.parasail_profile_free(self.pointer)
AttributeError: 'Profile' object has no attribute 'pointer'
----------------------------------------------------------------------
Ran 16 tests in 0.013s

I also fixed the sdist upload and TWINE_USERNAME in #50.

[jeffdaily]

@iiSeymour I didn't have your email address so reach you directly so using github. Test suite is merged. v1.2 is tagged. Looks like pypi upload worked this time. Please verify.

[iiSeymour]

Much better, you don't need to worry about having wheel installed anymore (to build the wheel after the sdist is downloaded and it saves ~2 minutes at install time). Thanks for taking the time to get the release out, I'll update my downstream projects.

$ pip install parasail==1.1.19 --no-cache                                                                                                                                                                     
Collecting parasail==1.1.19
  Downloading parasail-1.1.19.tar.gz (71 kB)
     |████████████████████████████████| 71 kB 2.7 MB/s 
    ERROR: Command errored out with exit status 1:
     command: /tmp/p/venv3/bin/python3 -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-85z4adye/parasail/setup.py'"'"'; __file__='"'"'/tmp/pip-install-85z4adye/parasail/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-install-85z4adye/parasail/pip-egg-info
         cwd: /tmp/pip-install-85z4adye/parasail/
    Complete output (5 lines):
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/tmp/pip-install-85z4adye/parasail/setup.py", line 18, in <module>
        from wheel.bdist_wheel import bdist_wheel as bdist_wheel_
    ImportError: No module named 'wheel'
    ----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
$ pip install parasail==1.2 --no-cache                                                                                                                                                                        
Collecting parasail==1.2
  Downloading parasail-1.2-py2.py3-none-manylinux2010_x86_64.whl (14.1 MB)
     |████████████████████████████████| 14.1 MB 3.2 MB/s 
Collecting numpy
  Downloading numpy-1.18.1-cp35-cp35m-manylinux1_x86_64.whl (19.9 MB)
     |████████████████████████████████| 19.9 MB 43.7 MB/s 
Collecting wheel
  Downloading wheel-0.34.2-py2.py3-none-any.whl (26 kB)
Installing collected packages: numpy, wheel, parasail
Successfully installed numpy-1.18.1 parasail-1.2 wheel-0.34.2

[jeffdaily]

Deployment moved to github actions.