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jeffdaily / parasail-python

Python bindings for the parasail C library.
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Add DNA matrix #9

Closed dburkhardt closed 6 years ago

dburkhardt commented 7 years ago

This looks like a really cool package! I'm just getting started with it, but I hope it will be useful for my research.

It would be nice if the dnafull matrix from the main implementation were available for the Python binding. It looks like the BLOSUM62 matrix could also be used, but as a new user, it's confusing to search for BLOSUM matrices and see that they are for protein alignment when I want to align DNA sequences.

I'm thinking of this: https://github.com/jeffdaily/parasail/blob/master/parasail/matrices/dnafull.h

jeffdaily commented 6 years ago

dnafull was added in 9fc4233be93b605ab0a32477a4742621e0d74ac7. Thank you for your interest in parasail!