Open Huilin-Li opened 1 month ago
parasail was designed to be performant and as a fallout of that we have (too) many alignment routines. For example, if you only need a score it is wasteful to calculate a traceback. The alignment routine you need is sw_trace_scan_16
, note the "trace" in the name.
I want
-a sw_scan_16 -e 1 -o 11
, however,-O EMOBOSS
also not work when-a sw_stats_striped_16
(defulat setting)./parasail_aligner -f myseqs.fasta
works well, and the output file is