jefferis
commented
6 years ago Hmm. Is it possible that one of the input folders/files has a non ascii character in the name? u2018 looks like it is a single quote.
Sent from my iPhone
On 20 Mar 2018, at 20:15, Grigorios Oikonomou notifications@github.com wrote:
Hi,
I am getting the following error message when trying to run the GUI. Do you have any ideas what might be causing this?
Many thanks, Grigorios
bindir is /Applications/Fiji.app/bin/cmtk munger is /Applications/Fiji.app/bin/cmtk/munger Jefferis, Potter 2007 Chosen reg params: Cachero, Ostrovsky 2010 /Users/grigoriosoikonomou/Documents/Prober_Lab/zBrain/registration/refbrain/Ref20131120pt14pl2.nrrd refbrain/Ref20131120pt14pl2.nrrd Cachero, Ostrovsky 2010 "/Applications/Fiji.app/bin/cmtk/munger" -b "/Applications/Fiji.app/bin/cmtk" -a -w -r 010203 -T 8 -X 52 -C 8 -G 80 -R 3 -A ‘--accuracy 0.4’ -W ‘--accuracy 1.6’ -T 4 -s "refbrain/Ref20131120pt14pl2.nrrd" images [ERROR] null Traceback (most recent call last): File "CMTK_Registration/CMTK_Registration_GUI.py", line 211, in File "CMTK_Registration/CMTK_Registration_GUI.py", line 211, in File "pyclasspath/cmtkgui$py.class", line 95, in makescript UnicodeEncodeError: 'ascii' codec can't encode character u'\u2018' in position 229: ordinal not in range(128)
at org.python.core.codecs.strict_errors(codecs.java:208) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:497) at org.python.core.JavaFunc.call(Py.java:2426) at org.python.core.PyObject.call(PyObject.java:431) at org.python.core.codecs.encoding_error(codecs.java:1538) at org.python.core.codecs.PyUnicode_EncodeIntLimited(codecs.java:1211) at org.python.core.codecs.PyUnicode_EncodeASCII(codecs.java:1170) at org.python.core.codecs.encode(codecs.java:165) at org.python.core.PyString.encode(PyString.java:3896) at org.python.core.PyFile.asWritable(PyFile.java:494) at org.python.core.PyFile.file_write(PyFile.java:454) at org.python.core.PyFile$file_write_exposer.call(Unknown Source) at org.python.core.PyObject.call(PyObject.java:465) at cmtkgui$py.makescript$7(/Applications/Fiji.app/plugins/CMTK_Registration/cmtkgui.py:98) at cmtkgui$py.call_function(/Applications/Fiji.app/plugins/CMTK_Registration/cmtkgui.py) at org.python.core.PyTableCode.call(PyTableCode.java:167) at org.python.core.PyBaseCode.call(PyBaseCode.java:307) at org.python.core.PyFunction.function_call(PyFunction.java:471) at org.python.core.PyFunction.call__(PyFunction.java:466) at org.python.pycode._pyx7.f$0(CMTK_Registration/CMTK_Registration_GUI.py:219) at org.python.pycode._pyx7.call_function(CMTK_Registration/CMTK_Registration_GUI.py) at org.python.core.PyTableCode.call(PyTableCode.java:167) at org.python.core.PyCode.call(PyCode.java:18) at org.python.core.Py.runCode(Py.java:1386) at org.python.core.builtin.eval(builtin.java:497) at org.python.core.builtin.eval(builtin__.java:501) at org.python.util.PythonInterpreter.eval(PythonInterpreter.java:259) at org.python.jsr223.PyScriptEngine.eval(PyScriptEngine.java:40) at org.python.jsr223.PyScriptEngine.eval(PyScriptEngine.java:31) at javax.script.AbstractScriptEngine.eval(AbstractScriptEngine.java:264) at org.scijava.script.ScriptModule.run(ScriptModule.java:160) at org.scijava.module.ModuleRunner.run(ModuleRunner.java:168) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:127) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:66) at org.scijava.thread.DefaultThreadService$3.call(DefaultThreadService.java:238) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or mute the thread.
grigorios-oikonomou
Hi,
I am getting the following error message when trying to run the GUI. Do you have any ideas what might be causing this?
Many thanks, Grigorios
bindir is /Applications/Fiji.app/bin/cmtk munger is /Applications/Fiji.app/bin/cmtk/munger Jefferis, Potter 2007 Chosen reg params: Cachero, Ostrovsky 2010 /Users/grigoriosoikonomou/Documents/Prober_Lab/zBrain/registration/refbrain/Ref20131120pt14pl2.nrrd refbrain/Ref20131120pt14pl2.nrrd Cachero, Ostrovsky 2010 "/Applications/Fiji.app/bin/cmtk/munger" -b "/Applications/Fiji.app/bin/cmtk" -a -w -r 010203 -T 8 -X 52 -C 8 -G 80 -R 3 -A ‘--accuracy 0.4’ -W ‘--accuracy 1.6’ -T 4 -s "refbrain/Ref20131120pt14pl2.nrrd" images [ERROR] null Traceback (most recent call last): File "CMTK_Registration/CMTK_Registration_GUI.py", line 211, in
File "CMTK_Registration/CMTK_Registration_GUI.py", line 211, in
File "pyclasspath/cmtkgui$py.class", line 95, in makescript
UnicodeEncodeError: 'ascii' codec can't encode character u'\u2018' in position 229: ordinal not in range(128)