I've been using this cmtk GUI for quite sometime, but recently had to install Fiji and CMTK onto a new Mac. I've run into problems trying to install. I've followed all the instructions that worked for me earlier this year, where I installed the plugins via Fiji's Update.. > CMTK. I've also installed IMCF Unibas as previously advised on this forum. My problem comes from trying to install CMTK when I go to Plugins > CMTK > Install CMTK.
This is the error message that I've been getting from imageJ's console:
[ERROR] Traceback (most recent call last):
File "CMTK_Registration/Install_CMTK.py", line 81, in
File "/Applications/Fiji.app/plugins/CMTK_Registration/cmtkgui.py", line 336, in download_and_untar_url
u = urllib2.urlopen(download_url)
File "/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py", line 154, in urlopen
File "/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py", line 435, in open
File "/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py", line 547, in http_response
File "/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py", line 473, in error
File "/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py", line 407, in _call_chain
File "/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py", line 556, in http_error_default
urllib2.HTTPError: HTTP Error 400: Bad Request
at org.python.core.PyException.doRaise(PyException.java:239)
at org.python.core.Py.makeException(Py.java:1638)
at org.python.core.Py.makeException(Py.java:1642)
at org.python.core.Py.makeException(Py.java:1646)
at urllib2$py.http_error_default$49(/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py:556)
at urllib2$py.call_function(/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py)
at org.python.core.PyTableCode.call(PyTableCode.java:173)
at org.python.core.PyBaseCode.call(PyBaseCode.java:306)
at org.python.core.PyBaseCode.call(PyBaseCode.java:197)
at org.python.core.PyFunction.__call__(PyFunction.java:485)
at org.python.core.PyMethod.instancemethod___call__(PyMethod.java:237)
at org.python.core.PyMethod.__call__(PyMethod.java:228)
at org.python.core.PyMethod.__call__(PyMethod.java:223)
at org.python.core.PyObject._callextra(PyObject.java:589)
at urllib2$py._call_chain$36(/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py:404)
at urllib2$py.call_function(/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py)
at org.python.core.PyTableCode.call(PyTableCode.java:173)
at org.python.core.PyBaseCode.call(PyBaseCode.java:306)
at org.python.core.PyBaseCode.call(PyBaseCode.java:197)
at org.python.core.PyFunction.__call__(PyFunction.java:485)
at org.python.core.PyMethod.instancemethod___call__(PyMethod.java:237)
at org.python.core.PyMethod.__call__(PyMethod.java:228)
at org.python.core.PyMethod.__call__(PyMethod.java:223)
at org.python.core.PyObject._callextra(PyObject.java:589)
at urllib2$py.error$39(/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py:473)
at urllib2$py.call_function(/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py)
at org.python.core.PyTableCode.call(PyTableCode.java:173)
at org.python.core.PyBaseCode.call(PyBaseCode.java:306)
at org.python.core.PyBaseCode.call(PyBaseCode.java:197)
at org.python.core.PyFunction.__call__(PyFunction.java:485)
at org.python.core.PyMethod.instancemethod___call__(PyMethod.java:237)
at org.python.core.PyMethod.__call__(PyMethod.java:228)
at org.python.core.PyMethod.__call__(PyMethod.java:218)
at urllib2$py.http_response$47(/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py:550)
at urllib2$py.call_function(/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py)
at org.python.core.PyTableCode.call(PyTableCode.java:173)
at org.python.core.PyBaseCode.call(PyBaseCode.java:168)
at org.python.core.PyFunction.__call__(PyFunction.java:437)
at org.python.core.PyMethod.__call__(PyMethod.java:156)
at urllib2$py.open$37(/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py:437)
at urllib2$py.call_function(/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py)
at org.python.core.PyTableCode.call(PyTableCode.java:173)
at org.python.core.PyBaseCode.call(PyBaseCode.java:187)
at org.python.core.PyFunction.__call__(PyFunction.java:449)
at org.python.core.PyMethod.__call__(PyMethod.java:171)
at urllib2$py.urlopen$1(/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py:154)
at urllib2$py.call_function(/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py)
at org.python.core.PyTableCode.call(PyTableCode.java:173)
at org.python.core.PyBaseCode.call(PyBaseCode.java:306)
at org.python.core.PyBaseCode.call(PyBaseCode.java:126)
at org.python.core.PyFunction.__call__(PyFunction.java:416)
at cmtkgui$py.download_and_untar_url$26(/Applications/Fiji.app/plugins/CMTK_Registration/cmtkgui.py:370)
at cmtkgui$py.call_function(/Applications/Fiji.app/plugins/CMTK_Registration/cmtkgui.py)
at org.python.core.PyTableCode.call(PyTableCode.java:173)
at org.python.core.PyBaseCode.call(PyBaseCode.java:306)
at org.python.core.PyBaseCode.call(PyBaseCode.java:176)
at org.python.core.PyFunction.__call__(PyFunction.java:449)
at org.python.pycode._pyx6.f$0(CMTK_Registration/Install_CMTK.py:81)
at org.python.pycode._pyx6.call_function(CMTK_Registration/Install_CMTK.py)
at org.python.core.PyTableCode.call(PyTableCode.java:173)
at org.python.core.PyCode.call(PyCode.java:18)
at org.python.core.Py.runCode(Py.java:1687)
at org.python.core.__builtin__.eval(__builtin__.java:497)
at org.python.core.__builtin__.eval(__builtin__.java:501)
at org.python.util.PythonInterpreter.eval(PythonInterpreter.java:255)
at org.python.jsr223.PyScriptEngine.eval(PyScriptEngine.java:57)
at org.python.jsr223.PyScriptEngine.eval(PyScriptEngine.java:31)
at javax.script.AbstractScriptEngine.eval(AbstractScriptEngine.java:264)
at org.scijava.script.ScriptModule.run(ScriptModule.java:173)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:125)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:64)
at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:247)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:750)
I would really appreciate any help on this, thanks!
Hi jefferis,
I've been using this cmtk GUI for quite sometime, but recently had to install Fiji and CMTK onto a new Mac. I've run into problems trying to install. I've followed all the instructions that worked for me earlier this year, where I installed the plugins via Fiji's Update.. > CMTK. I've also installed IMCF Unibas as previously advised on this forum. My problem comes from trying to install CMTK when I go to Plugins > CMTK > Install CMTK.
This is the error message that I've been getting from imageJ's console:
[ERROR] Traceback (most recent call last): File "CMTK_Registration/Install_CMTK.py", line 81, in
File "/Applications/Fiji.app/plugins/CMTK_Registration/cmtkgui.py", line 336, in download_and_untar_url
u = urllib2.urlopen(download_url)
File "/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py", line 154, in urlopen
File "/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py", line 435, in open
File "/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py", line 547, in http_response
File "/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py", line 473, in error
File "/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py", line 407, in _call_chain
File "/Applications/Fiji.app/jars/jython-slim-2.7.2.jar/Lib/urllib2.py", line 556, in http_error_default
urllib2.HTTPError: HTTP Error 400: Bad Request
I would really appreciate any help on this, thanks!