cannot open file 'CAFE_results/Gamma_clade_results.txt': No such file or directory

jeffersonfparil / compare_genomes

A comparative genomics workflow using Nextflow, conda, Julia and R

GNU General Public License v3.0

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cannot open file 'CAFE_results/Gamma_clade_results.txt': No such file or directory #18

Closed gdmdxl closed 5 months ago

gdmdxl commented 5 months ago

I noticed that there was an error when performing the mission GENE_EXPANSION_CONTRACTION. I changed line 134 in the file assess_specific_genes.nf. Change $TREE to an absolute path or copy it to the SPECIFIC_GENES folder to keep 176 lines of code working properly. But I am not sure if this is a bug.

Hope to get your reply.

jeffersonfparil commented 5 months ago

Good catch! Can you make a PR request then I'll merge it so I can properly give you credit? Otherwise I can make the change myself. Cheers!

gdmdxl commented 5 months ago

Thank you very much for your reply.You can change it directly.