jeffersonfparil / compare_genomes

A comparative genomics workflow using Nextflow, conda, Julia and R
GNU General Public License v3.0
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Extracting species specific gene families expansion and contraction #21

Open bijendrabio opened 3 months ago

bijendrabio commented 3 months ago

Hello @jeffersonfparil, Wondering if it is possible to extract orthogroups or a GO term list specifically for gene family contraction/expansion results for a particular species?

I found a file named "expanded_orthogroups.forgo" containing a list of GO term labels, but it lacks species-specific information. This information would be helpful for analyzing which gene families or orthogroups contributed to the expansion. Any suggestions would be greatly appreciated!

Kind regards, B